Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02239 ATGTTGCAAGGTAACAAATTAACTGGGTCAATTCCATCGTCCATTGGCAACTTATCTTCCCTCAACATGCTCGTCATGGGCTATAACAAAATTGAAGGAAGTATACCACCAAGTTTAGGACAATGCAAAAGCTTGCAATCGCTTGACCTATCTCACAACAACCTAAGTGGCAACATACCAAAGGAAGTTCTTGGTCTCTCTTCCCTTTCCATCTATGTGGGCTTCTATCATAACTCCCTAAATGGTCCTTTGCCTTCTGAAGTAGGCCAGCTAGTTAATTTAGCAGAATTAGACGTGTCGGAGAACAAATTATCAGGTGATATTCCTATCAATTTTGGTAAATGTACGAGCATGGAATACTTGGATCTTGGAGGTAACCAATTTGAGGGAACTATTCCTCAATCTTTAAGTGCTTTGAAAGGAATAGAAGAATTGAATCTCTCTAGAAACAACCTTTCTGGGAGTATTCCCCAATTTCTTGGCAAGTTTCAAATGCTCAGGAAGTCAAGGAAGGATGCTTCAACTACTAATTCATTTTCTGCAAAAGAGTTTCTACCACAGATTTCTTACTTGGGACTTAGTAAATCAACGAGCGAATTCTCAACGGAAAATTTAATTGGTTCTGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTTCAAATGATGGCTCTGTGGTTGCCGTTAAGGTTCTAAATCTCCAACAACAAGGTGCTTCGAAGAGTTTTGTTGATGAATGTAATGCTCTCTCAAACATACGACACCGAAATCTCCTCAAAATCATAACTTCCTGCTCAAGTATTGATGGACAAGGTGATGAATTTAAAGCTCTAGTCTTTAATTTCATGTCCAATGGAAATCTTGATAGCTGGCTTCATTCAACAAATCAAGGAACCAATCAAAGAAGATTGAGTCTCATCCAAAGATTGAACATTGCTATTGACATTGCATGTGGATTAGACTATCTCCACAATCATTGTGAAACTCCAATCATTCATTGTGATATAAAGCCAATGTATTGCTTGATGATGATATGGTAG 1038 38.15 MLQGNKLTGSIPSSIGNLSSLNMLVMGYNKIEGSIPPSLGQCKSLQSLDLSHNNLSGNIPKEVLGLSSLSIYVGFYHNSLNGPLPSEVGQLVNLAELDVSENKLSGDIPINFGKCTSMEYLDLGGNQFEGTIPQSLSALKGIEELNLSRNNLSGSIPQFLGKFQMLRKSRKDASTTNSFSAKEFLPQISYLGLSKSTSEFSTENLIGSGSFGSVYKGVLSNDGSVVAVKVLNLQQQGASKSFVDECNALSNIRHRNLLKIITSCSSIDGQGDEFKALVFNFMSNGNLDSWLHSTNQGTNQRRLSLIQRLNIAIDIACGLDYLHNHCETPIIHCDIKPMYCLMMIW* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27148808 27150064 + Chy4G089570.1 Chy04g02239 226138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02239 345 Pfam Leucine rich repeat 2 55 IPR001611 GO:0005515
Chy04g02239 345 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Chy04g02239 345 Gene3D Phosphorylase Kinase; domain 1 187 281 - -
Chy04g02239 345 ProSiteProfiles Leucine-rich repeat profile. 44 65 IPR001611 GO:0005515
Chy04g02239 345 Pfam Protein kinase domain 201 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02239 345 SUPERFAMILY Protein kinase-like (PK-like) 177 341 IPR011009 -
Chy04g02239 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 2 166 - -
Chy04g02239 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 164 341 - -
Chy04g02239 345 Gene3D Transferase(Phosphotransferase) domain 1 282 343 - -
Chy04g02239 345 ProSiteProfiles Protein kinase domain profile. 200 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02239 345 Gene3D Ribonuclease Inhibitor 1 186 IPR032675 -
Chy04g02239 345 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 164 341 - -
Chy04g02239 345 PRINTS Leucine-rich repeat signature 45 58 - -
Chy04g02239 345 PRINTS Leucine-rich repeat signature 91 104 - -
Chy04g02239 345 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524
Chy04g02239 345 SUPERFAMILY L domain-like 2 167 - -
Chy04g02239 345 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02239 Chy-Chr4:27148808 Chy04g02236 Chy-Chr4:27138925 2.93E-22 dispersed
Chy04g02239 Chy-Chr4:27148808 Chy04g02241 Chy-Chr4:27152653 6.13E-15 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71237 PF00069 Pkinase 4.90E-22 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02239 - - csv:101219231 380.948