Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02242 ATGACCGACAATTCAATTCTGCTTATCCCTGTGAGTAAACTGAGGGATTGGGCATTTGCTTTCATTGCAGATTCGGAATTTCTCAGCTGCCGGATGAGGCAGAATTATTGCTTTAACACCAACAGGATTCTGCGTATACTTCTTTATCATTTCTTTTTTATATTCATGAGCTTGGCCTTTGCGAAGACACCCATATCTGGAATTGAATCAGATCGTTTGGCTCTACTTGATCTGAAAAGTAGAATACTCAACGACCCACTCAAAATCATGAGCTCTTGGAACGATTCCAGGCATTTATGTGATTGGACTGGCATTACTTGTAATTCCACCATTGGAAGAGTTATGGTCTTGGACTTGGAAGCTCACAAACTAAGTGGTTCGATACCAAATTCTTTAGGAAATATGACTCATCTCATTGCAATTAGATTGGGAGACAACAGACTCCACGGCCATATTCCTCAAGAATTTGGTCAGCTACTACAATTACGTCATCTCAATTTGTCCTACAATAACTTCAGTGGCGAGATTCCAGGAAATATAAGTCATTGCACCCAGCTGGTTCATTTGGAGTTGGGCAACAATGGGCTTGAAGGTCAGATTCCACACCAGTTGTTCACGTTAACCAAGGTGAAACGACTCAGTTTTCCCAAAAACAATTTGATTGGAACTATCCCATCTTGGATAGGAAACTTTTCTTTCCTCCTTCATTTATCAGTCGCGTATAACAATTTTCAAGGAAACATTCCCAACGAACTGGGGCATCTGAGAAGATTGGAGTTCTTTGCAATTACAGCAAACTATTTGACAGGTACAGTGCCACTTTCACTCTATAATATAACTTCTTTGACTTTGATGAGTCTTACTGCAAATCGACTACAAGGAACTCTACCACCAAATATCGGATATACACTACCCAATCTTCAGATCTTTGTTGGTGGCGGCAATAATTTCACAGGGTCTATTCCCACGTCGTTTGCCAACATCTCCGGTCTTCGAGAACTAGATCTTCCTAGTAACAGTTTCGTTGGAATGCTACCTAATGATTTGGGGAGCTTAAAAGACTTAGAGAGACTCAATTTTGAAGACAACATACTTGGAACTGGAAGAGTTGGTGACTTAAATTTTATCAGTTCCTTGGCTAATTGTACTAGTCTAAAGGTTTTGGGTCTGTCATGGAATCATTTTGGAGGAGTATTGCCTTCATCTATTGGCAACCTATCAAGCCAGCTCACAGCGTTAACCTTGGGTGCAAATATGTTAAGTGGAAGCATTCCTTCTGCGATTGCAAACCTGATTAACTTGCAACATCTAGTGGTGGGACAGAATTATTTGAATGGTAGTGTTCCTTCTAATATTGGGAATCTTCAAAACTTGGTGAAGCTATTTTTGCAAGGTAACAATTTAACTGGGCCAATTCCATCATCTATTGGTAACTTGTCTTCGATAGTTAAGCTTTACATGAACGATAACAGACTTGAAGGAAGCATACCAAGAAGCTTGGGACGTTGCAAAATGCTTCAAATTCTTAACCTATCTGGTAACAAACTTAGTGGCGTTATACCAAATGAAGTTCTTCATTTCTCTTCCTTTTTGGCCTATTTGGCCTTGAATAATAACTCACTTACTGGTCCATTAGCACTTGAAGTGGATGAGGTGGTTAGTTTGATAACGTTGGATGTATCAAAGAACAAATTATCAGGTAACATTTCTAGCAATCTTGGTAAATGTGTCAGCATGCGTTACTTGGATTTGAGTGGTAACCAATTTGAGGGAACAATTCCTCAATCTTTAGAAACTTTAAAAAGTCTTGAAGTAATAAATCTTTCCAGTAACAACTTGTCTGGGTCAATTCCCCAATTTCTTGGTCAGCTTCACTCTCTCAAGTATGTCAATCTATCCTATAATGACTTTGAGGGGAAAGTGCCAACAGATGGAATTTTTTCCAATTCAACTATGATTTCTATCATTGGAAATAATGATCTATGTGATGGTTTGCAAGAATTAAGTTTACCTCCGTGCAAGCCTAACCAAACACATTTGCCCGATAAGCGGTCTCTAACATCAAAGGTGTTGATCCCTGTAGTATCTACCGTCACATTCATTGTTATTTTGGTGAGCATACTTTTTGTGTGTTTTGTGTTTAAGAAGTCCAGGAAGGATGCCTCAACTCCATCTTCTACAAAGGAGCTTCTACCACAAATTTCTTATTTAGAACTGAACAAATCAACTAACGGATTCTCTATGGACAATTTGATTGGTTCGGGTAGTTTTGGCTCTGTGTATAAAGGTGTTCTTCCAAATGGTGGATCTATTGTTGCCGTTAAGGTTCTAAACCTCCAACAACAAGGTGCTTCCAAGAGTTTTGTTGATGAATGCAACACTCTCTCAAACATACGGCATCGGAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGTACAAGGCAACGAATTCAAAGCATTAGTCTTCAATTTCATGTCCAAGGGAAATCTTGATTGTTGGCTTCATCCTGCAAATCAAGGACACGATCAAAGAAGGTTGAGTCTCCTCCAAAGATTGAATATTGCTATTGATATAGCATGTGGATTAGATTATCTTCATAATCTTTGTGAAATTCCTATTGTTCATTGCGATCTAAAGCCTAGCAATATATTGCTTGACGACGATATGGTAGCTCATGTAGGAGACTTTGGGTTAGCTAGATACATGTTGGAAGGACCGAATGCACCATTATCTTTTAGTCAAAGCATGTCACTTGCACTCAAGGGTTCGATAGGGTATATTCCTCCAGAGTACGGCACTGGTAGCAGAATTTCCATCGAAGGAGATGTCTTCAGCTATGGTATACTACTATTAGAGATGCTCATCGGAAAAAGACCCACTGATGACACATTTGGTCATGGTGTGGACATTCATTTGTTCGCTACCATGGGGCTATCTCGAGATGCCTTGGGCATAATCGATCATTCTATGCTATTAGTAGAAACAGATCAAGAAGAAGAAAGAGAAGACAATATACAAGAAATAGCGACAATGAGTGAGGAACAACACAGAAAAATCATACCGAGATATGTGGAAGAATGTCTAGTATCAATGATGAGAATCGGATTGTCATGCTCCTTGAGGGCACCTAGGGAGAGAACACCGATGAATGTGGTCGTTAATGAATTGCAAGCAATTAAAAGCTCCTATCTCAAGTTTAAAAAGACACGCCAGAGGTAA 3228 39.31 MTDNSILLIPVSKLRDWAFAFIADSEFLSCRMRQNYCFNTNRILRILLYHFFFIFMSLAFAKTPISGIESDRLALLDLKSRILNDPLKIMSSWNDSRHLCDWTGITCNSTIGRVMVLDLEAHKLSGSIPNSLGNMTHLIAIRLGDNRLHGHIPQEFGQLLQLRHLNLSYNNFSGEIPGNISHCTQLVHLELGNNGLEGQIPHQLFTLTKVKRLSFPKNNLIGTIPSWIGNFSFLLHLSVAYNNFQGNIPNELGHLRRLEFFAITANYLTGTVPLSLYNITSLTLMSLTANRLQGTLPPNIGYTLPNLQIFVGGGNNFTGSIPTSFANISGLRELDLPSNSFVGMLPNDLGSLKDLERLNFEDNILGTGRVGDLNFISSLANCTSLKVLGLSWNHFGGVLPSSIGNLSSQLTALTLGANMLSGSIPSAIANLINLQHLVVGQNYLNGSVPSNIGNLQNLVKLFLQGNNLTGPIPSSIGNLSSIVKLYMNDNRLEGSIPRSLGRCKMLQILNLSGNKLSGVIPNEVLHFSSFLAYLALNNNSLTGPLALEVDEVVSLITLDVSKNKLSGNISSNLGKCVSMRYLDLSGNQFEGTIPQSLETLKSLEVINLSSNNLSGSIPQFLGQLHSLKYVNLSYNDFEGKVPTDGIFSNSTMISIIGNNDLCDGLQELSLPPCKPNQTHLPDKRSLTSKVLIPVVSTVTFIVILVSILFVCFVFKKSRKDASTPSSTKELLPQISYLELNKSTNGFSMDNLIGSGSFGSVYKGVLPNGGSIVAVKVLNLQQQGASKSFVDECNTLSNIRHRNLLKIITSCSSIDVQGNEFKALVFNFMSKGNLDCWLHPANQGHDQRRLSLLQRLNIAIDIACGLDYLHNLCEIPIVHCDLKPSNILLDDDMVAHVGDFGLARYMLEGPNAPLSFSQSMSLALKGSIGYIPPEYGTGSRISIEGDVFSYGILLLEMLIGKRPTDDTFGHGVDIHLFATMGLSRDALGIIDHSMLLVETDQEEEREDNIQEIATMSEEQHRKIIPRYVEECLVSMMRIGLSCSLRAPRERTPMNVVVNELQAIKSSYLKFKKTRQR* 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27158472 27161779 + Chy4G089600.1 Chy04g02242 226141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02242 1075 SUPERFAMILY L domain-like 408 663 - -
Chy04g02242 1075 Pfam Leucine rich repeat 457 516 IPR001611 GO:0005515
Chy04g02242 1075 Pfam Leucine rich repeat 579 637 IPR001611 GO:0005515
Chy04g02242 1075 Gene3D Phosphorylase Kinase; domain 1 710 827 - -
Chy04g02242 1075 ProSiteProfiles Protein kinase domain profile. 746 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02242 1075 SUPERFAMILY L domain-like 69 364 - -
Chy04g02242 1075 Gene3D Ribonuclease Inhibitor 307 370 IPR032675 -
Chy04g02242 1075 Gene3D Ribonuclease Inhibitor 371 677 IPR032675 -
Chy04g02242 1075 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 68 1063 - -
Chy04g02242 1075 Pfam Protein kinase domain 748 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02242 1075 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 68 1063 - -
Chy04g02242 1075 ProSitePatterns Protein kinases ATP-binding region signature. 752 775 IPR017441 GO:0005524
Chy04g02242 1075 SUPERFAMILY Protein kinase-like (PK-like) 719 1059 IPR011009 -
Chy04g02242 1075 SMART serkin_6 746 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02242 1075 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515
Chy04g02242 1075 Gene3D Ribonuclease Inhibitor 187 306 IPR032675 -
Chy04g02242 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 876 888 IPR008271 GO:0004672|GO:0006468
Chy04g02242 1075 SMART LRR_typ_2 600 624 IPR003591 -
Chy04g02242 1075 SMART LRR_typ_2 431 455 IPR003591 -
Chy04g02242 1075 SMART LRR_typ_2 159 183 IPR003591 -
Chy04g02242 1075 SMART LRR_typ_2 184 207 IPR003591 -
Chy04g02242 1075 SMART LRR_typ_2 479 503 IPR003591 -
Chy04g02242 1075 Pfam Leucine rich repeat N-terminal domain 69 108 IPR013210 -
Chy04g02242 1075 Gene3D Ribonuclease Inhibitor 70 185 IPR032675 -
Chy04g02242 1075 Pfam Leucine Rich repeat 381 397 IPR001611 GO:0005515
Chy04g02242 1075 Gene3D Transferase(Phosphotransferase) domain 1 828 1074 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01573 Chy-Chr3:17826575 Chy04g02242 Chy-Chr4:27158472 0 dispersed
Chy04g01332 Chy-Chr4:19868158 Chy04g02242 Chy-Chr4:27158472 1.07E-171 dispersed
Chy04g02168 Chy-Chr4:26770838 Chy04g02242 Chy-Chr4:27158472 2.89E-14 dispersed
Chy04g02231 Chy-Chr4:27122975 Chy04g02242 Chy-Chr4:27158472 0 dispersed
Chy04g02235 Chy-Chr4:27135154 Chy04g02242 Chy-Chr4:27158472 8.16E-06 dispersed
Chy04g02236 Chy-Chr4:27138925 Chy04g02242 Chy-Chr4:27158472 2.05E-27 dispersed
Chy04g02237 Chy-Chr4:27143181 Chy04g02242 Chy-Chr4:27158472 5.14E-50 dispersed
Chy04g02238 Chy-Chr4:27147590 Chy04g02242 Chy-Chr4:27158472 8.16E-29 dispersed
Chy04g02240 Chy-Chr4:27150139 Chy04g02242 Chy-Chr4:27158472 5.42E-72 dispersed
Chy10g00051 Chy-Chr10:1257822 Chy04g02242 Chy-Chr4:27158472 5.17E-61 dispersed
Chy12g00073 Chy-Chr12:642491 Chy04g02242 Chy-Chr4:27158472 2.97E-17 dispersed
Chy12g00078 Chy-Chr12:778893 Chy04g02242 Chy-Chr4:27158472 4.00E-16 dispersed
Chy04g02241 Chy-Chr4:27152653 Chy04g02242 Chy-Chr4:27158472 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71239 PF00069 Pkinase 8.40E-38 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02242 - - csv:101218525 2091.62