Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02251 ATGGATTTTGAACCAGGAACGTCGATCTTGCAAAACGGAGCCGTCAAGAGTTCGCCCAGGCACGCTCGAACGGCTCACAACATGTCATCGTCATCGTTGCGGAAAAAGTCCGATTTAACCCTCGTCTCCAAGGTTCGTTTCGGTTCCCTCAGACTATTTCTTGTAAATCTTCAAGAAGTCATTTTGGGAACTAGAATTTGGATTCTTTTTCCGGCCGTGCCGTTGGCTGTTTTGGCTAACTCTTTCGGCTTTGCAAAACCATGGGTTTTCGTTGTTAGCTTAATGGGTATTGCTCCACTTGCCGAACGCCTTAGCTTTCTGACCGAGCAAATCTCATACTTCACAGGTCCTACAGTCGGTGGGTTGCTAAATGCGACATGTGGCAATGCGACGGAATTAATCGTAGCAATTTTTGCACTAAGAAAGGGAAAGATTAAGTTGGTGAAGTATTCTCTGTTGGGATCTCTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCTTTGGTGGCATTCTCAATCTTAACAAACAACAGACCTTTGACTCCAGTCAAGCTGAAGTGAACTCGCACATGCTCATGTTGGCGCTTCAGTGCTACTTTCTACCCATGTTATTCCCTAACGTCGAAGGATCGGCTGACGAGGCAAGAGTTGGTGCGCTACGATTATCTCGAGTATGTAGTGTAGTAATGCTGGTTGCATATGTCGCTCACTTGATCTTTAACCTTTGGAGTAGTCATCGTCCATATTTTGAAAGAAATGAGGAATTGGACGAATACGACGACGTAGTAGAAGAAGGTCCGGTGATGGGAAAATGGAGCGCCATGGCTTGGTTGGTGGTTATTACCCTTCTCGTGGCTTTGTTATCTGAGTACGTGGTCTCCACAATTGAGGATGCATCAGAAACTTGGGGTTTATCTGTTGCGTTCCTTAGCATAATCTTGCTACCATTGGTTGGAAATGCAGCTGAGCATGCAGGTGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATTACTTTAGGCGTTGCATTAGGATCTGCAAATCAAATAGGAATGTTTGTGGTTCCTTTGTGTGTAATAGTTGCTTGGATTATGGGAATAAATATGGATCTCAATTTTAATATTATCGAAACTGCCTCCCTTGCTCTCTCAATATTGGCTTCATCATCCATTTTACAGAATGGTAACTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTACATTGTGATTGCAACATATTTCTTCCTAACTAGTGATGATGTTACTATCAACAATTTAGGGCTGCCCACCGTCCAACTAAAGCAACAATAG 1323 43.24 MDFEPGTSILQNGAVKSSPRHARTAHNMSSSSLRKKSDLTLVSKVRFGSLRLFLVNLQEVILGTRIWILFPAVPLAVLANSFGFAKPWVFVVSLMGIAPLAERLSFLTEQISYFTGPTVGGLLNATCGNATELIVAIFALRKGKIKLVKYSLLGSLLSNLLLVLGTSLFFGGILNLNKQQTFDSSQAEVNSHMLMLALQCYFLPMLFPNVEGSADEARVGALRLSRVCSVVMLVAYVAHLIFNLWSSHRPYFERNEELDEYDDVVEEGPVMGKWSAMAWLVVITLLVALLSEYVVSTIEDASETWGLSVAFLSIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSANQIGMFVVPLCVIVAWIMGINMDLNFNIIETASLALSILASSSILQNGNSHYMKGLILLLFYIVIATYFFLTSDDVTINNLGLPTVQLKQQ* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27196737 27201613 - Chy4G089690.1 Chy04g02251 226150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02251 440 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 19 431 - -
Chy04g02251 440 Pfam Sodium/calcium exchanger protein 87 245 IPR004837 GO:0016021|GO:0055085
Chy04g02251 440 Pfam Sodium/calcium exchanger protein 277 419 IPR004837 GO:0016021|GO:0055085
Chy04g02251 440 TIGRFAM cax: calcium/proton exchanger 71 419 IPR004798 GO:0006816|GO:0015369
Chy04g02251 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 431 IPR004713 GO:0006812|GO:0008324|GO:0016021
Chy04g02251 440 TIGRFAM caca2: calcium/proton exchanger 53 419 - -
Chy04g02251 440 Gene3D - 117 256 IPR044880 -
Chy04g02251 440 Gene3D - 264 421 IPR044880 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02251 Chy08g00634 CCT
Chy04g02251 Chy08g00634 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02251 Chy-Chr4:27196737 Chy12g00289 Chy-Chr12:3160759 7.09E-06 dispersed
Chy04g00713 Chy-Chr4:8668034 Chy04g02251 Chy-Chr4:27196737 7.33E-95 transposed
Chy06g01915 Chy-Chr6:23065465 Chy04g02251 Chy-Chr4:27196737 1.11E-83 transposed
Chy11g00737 Chy-Chr11:10002068 Chy04g02251 Chy-Chr4:27196737 1.96E-95 transposed
Chy04g02251 Chy-Chr4:27196737 Chy08g00634 Chy-Chr8:14250594 7.31E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02251 K07300 - csv:101213176 798.505