Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02257 ATGGAAATTCCTTCCACCACTCCCAAAACTGTCGAAGAAATTTTCAAAGATTACACTGCTCGTCGTACCGCTCTTGTTCGCGCCCTTGCTCACGATGTTGATGAATTCTACAGCCTTTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCTAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCCCTTGGAATTAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATTTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTATTTGAAGTTGTGACAGAACGAACGCCTGTCAAAGAGAAGCCTAGTGTAGACAGTGGAAGTAGATCACAAGGAAGCTCTAAGAGATCCAACGATGGGCAGGTGAAAAGCAACCCAAAACTTGCTGAACAGAGTTGCGAGGAGGATGTCGATGAACACAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTCTGGATCGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCTTAACATGTTTACATTCTCATGGGTATGTTGGATCCTGA 681 44.35 MEIPSTTPKTVEEIFKDYTARRTALVRALAHDVDEFYSLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNERKRLFSLMNDLPTVFEVVTERTPVKEKPSVDSGSRSQGSSKRSNDGQVKSNPKLAEQSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCLTCLHSHGYVGS* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27226324 27228549 + Chy4G089750.1 Chy04g02257 226156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02257 226 MobiDBLite consensus disorder prediction 145 170 - -
Chy04g02257 226 PANTHER CPG BINDING PROTEIN 5 216 IPR045104 GO:0006355|GO:0042393
Chy04g02257 226 SUPERFAMILY FYVE/PHD zinc finger 176 219 IPR011011 -
Chy04g02257 226 MobiDBLite consensus disorder prediction 138 175 - -
Chy04g02257 226 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Chy04g02257 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 222 IPR013083 -
Chy04g02257 226 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 5 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02257 Chy-Chr4:27226324 Chy06g01612 Chy-Chr6:18609086 5.90E-74 dispersed
Chy10g00423 Chy-Chr10:10085746 Chy04g02257 Chy-Chr4:27226324 2.70E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02257 - - csv:101211970 409.068