Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02260 ATGGAAGGCCATCATCATCCTCATCCTCATCCCCATCCCCATCCTCATCCCCTTATTCATCTCCATCAACAGCAACAGATTCAACATCCGCCTCCTCCGCCACCGCATCTCCACCAGAGCCTTGCCGTCGATCAAGCTGCCACCGGCACAGCCATCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCGGAGCTGGATCAAACCTTCATGGAAACAAAACGAAACAAACTCTTGTGGGAAATTACTGCCTCGAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAATTACAAGCAATATTTGAAGCAAGAAGGGAAAGGTTATTATGGGCGGAGGCGGAGAGCGGCGGGAGCGGGTTAAAGAAGAAAATGATGGTATTATCGTCCGATGACGAGGATGAGAACGACGATAGCGATGGCGATGGAGGTGAGACAAAAGTTAGCGGTAGGAAGAGGAAAAAAGTTAAAGGAACGACGATGGGCGGGGCAGAGGGGAGCGGAAAGAGTAGTATGAATGGATTGAAAGAAATATTGGAAGATTTTATGAATCAACAAATGCAAATGGAAGTGCAATGGAGAGAAGCATTTGAGGTAAGAGAAAAAGAGAGACAAATGAAAGAAATGGAATGGAGAAGAAATATGGAAGCTTTAGAACATGAAAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGAAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA 918 43.25 MEGHHHPHPHPHPHPHPLIHLHQQQQIQHPPPPPPHLHQSLAVDQAATGTAIADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFEARRERLLWAEAESGGSGLKKKMMVLSSDDEDENDDSDGDGGETKVSGRKRKKVKGTTMGGAEGSGKSSMNGLKEILEDFMNQQMQMEVQWREAFEVREKERQMKEMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27260336 27261403 + Chy4G089780.1 Chy04g02260 226159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02260 305 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 41 302 - -
Chy04g02260 305 MobiDBLite consensus disorder prediction 170 213 - -
Chy04g02260 305 Coils Coil 249 276 - -
Chy04g02260 305 PANTHER - 41 302 - -
Chy04g02260 305 ProSiteProfiles Myb-like domain profile. 59 115 IPR001005 -
Chy04g02260 305 MobiDBLite consensus disorder prediction 1 38 - -
Chy04g02260 305 CDD GT1 57 122 - -
Chy04g02260 305 Gene3D - 59 120 - -
Chy04g02260 305 Pfam Myb/SANT-like DNA-binding domain 58 142 IPR044822 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02260 Chy08g00631 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02260 Chy-Chr4:27260336 Chy09g01362 Chy-Chr9:15463264 1.80E-08 dispersed
Chy03g01676 Chy-Chr3:18491733 Chy04g02260 Chy-Chr4:27260336 3.98E-11 transposed
Chy04g01960 Chy-Chr4:25522104 Chy04g02260 Chy-Chr4:27260336 4.45E-06 transposed
Chy07g01119 Chy-Chr7:16101870 Chy04g02260 Chy-Chr4:27260336 2.54E-37 transposed
Chy04g02260 Chy-Chr4:27260336 Chy08g00631 Chy-Chr8:14187749 4.34E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17954 PF13837 Myb_DNA-bind_4 2.50E-18 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02260 - - csv:101211490 481.485