Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02279 ATGGCCGCCGGATCCCCAGCATGGCTCAACACCGGCGACAATTCCTGGCAAATTACAGCCTCCACTCTCGTAGGACTTCAGAGCATGCCTGGACTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCTGTCAATTCTGCATTTATGGCTCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCCTTCGGCGACCAGTTGATTCCTTTGTGGGGCAAAGGAATTCCAGCTCTGTCCCAAAGTTATCTAATAGGGCAAGGCAATATCCCTGAGAGTGGCGCTAAGGATGGAAGAGGAACGCCCAGAATTCAACCCAATGTTCCCATGGCTTCACTTGTGTATTTTCAATTTACTTTTGCTGCGATTACTGTGATTTTACTTGGTGGGTCGGTTCTTGCAAGAATGAACATCAAAGCTTGGATGGCCTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGCGCATACAGTGTTTGGGGCGGTGGGTTTCTGTTTCAGTGGGGAGTAATTGATTACTCCGGTGGGTATGTAATTCATCTTTCGTCTGGAATTGCTGGGTTAACAGCAGCTTATTGGGTTGGGCCGAGGATAAAAAGTGACAGAGAGAGGTTTCCGCCGAATAACGTGTTGCTTATGTTGGCCGGAGCAGGGCTGTTGTGGATGGGGTGGTCGGGTTTTAACGGGGGAGCACCGCACTCGGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTGAGTGCGGCGACGAGCTTGTTGGTTTGGACCATTTTGGATGTGTTCTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACACCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAATCCTAGCAGGAAGCATTCCATGGCTATCCATGATGGTCCTTCATAAAAAATTGAGTTTCTTGCAAAAGGCTGATGACACGCTTGGCGTATTTCACACGCACGCAGTGGCAGGATTAATGGGCGGGCTTTTAACTGGGCTTTTAGCGGAGCCCACTCTTTGCGATCTCTATCTACCGATCATCGGCACGCGCGGCGCCTTTTACGGCGGAAGCGGCGGCGTTCAGTTCCTTAAACAACTGGCCGGATCCACCTTCATCATAGGCTGGAACATAGTCTCCACCACCGTAATACTTCTCTTTATTCGCCTTTTTATGCCCCTGAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCAAGAAGGCACGGCAATGCGGCGACCAATATGGAAGAAGGAGCCGGTTCGCCTTATATAAATGGTGCAAGAGGAGTGATCATCGAATTGTAA 1431 50.94 MAAGSPAWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPALSQSYLIGQGNIPESGAKDGRGTPRIQPNVPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGILAGSIPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPIIGTRGAFYGGSGGVQFLKQLAGSTFIIGWNIVSTTVILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAATNMEEGAGSPYINGARGVIIEL* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27373563 27376345 - Chy4G089970.1 Chy04g02279 226178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02279 476 PANTHER AMMONIUM TRANSPORTER MEP2 4 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy04g02279 476 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005887
Chy04g02279 476 PRINTS Rhesus blood group protein signature 306 324 IPR002229 GO:0005887
Chy04g02279 476 PRINTS Rhesus blood group protein signature 344 360 IPR002229 GO:0005887
Chy04g02279 476 PRINTS Rhesus blood group protein signature 220 238 IPR002229 GO:0005887
Chy04g02279 476 PRINTS Rhesus blood group protein signature 251 273 IPR002229 GO:0005887
Chy04g02279 476 TIGRFAM amt: ammonium transporter 13 436 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy04g02279 476 Pfam Ammonium Transporter Family 16 436 IPR024041 GO:0008519|GO:0016020|GO:0072488
Chy04g02279 476 Gene3D Ammonium transporter AmtB like domains 1 439 IPR029020 -
Chy04g02279 476 ProSitePatterns Ammonium transporters signature. 181 206 IPR018047 GO:0008519|GO:0016020|GO:0072488
Chy04g02279 476 PANTHER AMMONIUM TRANSPORTER 2 4 473 - -
Chy04g02279 476 SUPERFAMILY Ammonium transporter 8 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01149 Chy-Chr3:14748208 Chy04g02279 Chy-Chr4:27373563 1.22E-176 dispersed
Chy04g02279 Chy-Chr4:27373563 Chy05g00737 Chy-Chr5:10134281 2.70E-22 dispersed
Chy04g02279 Chy-Chr4:27373563 Chy05g00267 Chy-Chr5:2437527 4.46E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02279 K03320 - csv:101207321 941.028