Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02291 ATGAGTAACATAAACCAAACAATAAATACGCTCGCTGGGGGATCTTCTGACAACAGAACCAATAATTTCGCCATGGAAGTTCCTAAATTCAAGTCCTTTCAACCTCCTCCATTCCCCATGTCTCCTTCTTCTTACCTTTCCTCTTTCTCTTCTGGTTTAAGCCCCACTGAGATTCTAAATTCCCCTCTTCTCTTCTCCTTTGGTGTTTTTCCATCTCCTACTACCGGTGCTTTAAACTTGAGAAATGATTATGAGGAGGTTGACCAACAAGAAATGAAGGGAGATGTTAAAAATTACTCTGTTTCTGCGTATAACCCACAAACAGAATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACTCTACTGAATCCAAGCGGTTTGTCGTGTGATGAAAGTGGAGCTAAATCAGAATTTGTTAACACAGAAATGGCGGCAGCTGAATCAAAGCAAAATTCTCAGCTAGCAATTTACAACAGAGAACAACAAAAATCAGAGAACGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACGTTTCCAAGTTGCCCAACAAAGAAAAAAGTAGAAAGATCATTAGATGGGCAAATTACTGAGATTGTTTATAAGGGAACCCATAATCACGCCAAGCCTCAGCCGACAAGACGTTCCAGTAACTCCGGCGTTTACGATCCATCGGCGGCAGAAACCGGGGTGTTGCAGGAGGACTGTTCGGTGTCGGTGGGGGAGGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGATTGAGGACAATGAAAACGAACCGGAAGCTAAGAGATGGAAAGGAGAAATTGAGAATGAGGGATACTGTGGGGGAGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTTGTTCAAACAACAAGTGAAATTGACATACTGCCTGATGGTTACAGATGGAGGAAATACGGACAAAAAGTCGTCAAAGGAAATCCAAATCCCAGGAGCTACTACAAATGCACATCTGTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCCAACGACATGAGGGCAGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCACGTGGCAGCGGTGGCGGTGGCTACAACACCATCAACCGACCTATACCAACCAACATTCCAATGGCATTGAGGCCATTATCCAGTGTCACCAGCCATTCTTTCCCAGCAAATTTTCCAGCTGCATTCCGGCCAGGAAATTTAGGAATGTCAGAAACACAAGCATCATCGTTTCCATTTCAAACATCACATGGAGTGCTTCCAAGTTTCCAAGTTTCGGGATTTGGATCAGCAGCCAAGGAAGAAGTAAGAGACGACACATACTTCATCAACTCATTTCTATCTTAG 1425 44.07 MSNINQTINTLAGGSSDNRTNNFAMEVPKFKSFQPPPFPMSPSSYLSSFSSGLSPTEILNSPLLFSFGVFPSPTTGALNLRNDYEEVDQQEMKGDVKNYSVSAYNPQTESSVSSYFQSSSSNVTLLNPSGLSCDESGAKSEFVNTEMAAAESKQNSQLAIYNREQQKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGTHNHAKPQPTRRSSNSGVYDPSAAETGVLQEDCSVSVGEEEFEPNSPFSNSIEDNENEPEAKRWKGEIENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGGGYNTINRPIPTNIPMALRPLSSVTSHSFPANFPAAFRPGNLGMSETQASSFPFQTSHGVLPSFQVSGFGSAAKEEVRDDTYFINSFLS* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27436313 27438984 + Chy4G090090.1 Chy04g02291 226190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02291 474 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 MobiDBLite consensus disorder prediction 1 20 - -
Chy04g02291 474 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 456 IPR044810 GO:0003700
Chy04g02291 474 MobiDBLite consensus disorder prediction 255 282 - -
Chy04g02291 474 Gene3D WRKY domain 305 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 SMART WRKY_cls 318 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 SMART WRKY_cls 169 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 MobiDBLite consensus disorder prediction 219 243 - -
Chy04g02291 474 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 19 456 - -
Chy04g02291 474 Gene3D WRKY domain 154 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 MobiDBLite consensus disorder prediction 228 242 - -
Chy04g02291 474 SUPERFAMILY WRKY DNA-binding domain 165 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy04g02291 474 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02291 Chy-Chr4:27436313 Chy09g00217 Chy-Chr9:1819693 1.07E-81 dispersed
Chy12g01329 Chy-Chr12:17635968 Chy04g02291 Chy-Chr4:27436313 5.05E-14 dispersed
Chy04g02291 Chy-Chr4:27436313 Chy10g01039 Chy-Chr10:15648725 1.08E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17955 PF03106 WRKY 1.30E-24 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02291 K13424 - csv:101205651 860.907