Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02309 ATGAGTTGTAACGAGAAGAATAGAGGGGTAAATGATAGGGAAACTGAGCACCCAGTTTTGACCAAGGCACATCAGAAACCAGTCATCCAGAATGGATCCATAACGGCCCAACACTTGACCATCGATGATAATCTTCTTGTTGACCCCAAATTGCTATTTATTGGATCCAAGATTGGCGAGGGCGCTCACGGAAAAGTTTATGAAGGCAGGTACCGGAATGAAATTGTCGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCACTTGAAAGTCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGGATGTCACTCAGGAAGTATCTGATGAATAATCGTAAACAACAGCTGGACCCTCGGATGGCCATTGACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGGTCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACAGGGACTTACCGTTGGATGGCTCCTGAGTTGTATAGCACTGTTACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTTGACGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATCTGCAAGCTGCATATGCGGCTGCTTTTAAGCAAGAGAGACCCAGTATTCCAGGCGACATATCTCCCGAGCTGGCATTTATAGTACAATCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTATTTACACTCCCACCTCCTTCACAGTCTTCACCATCGTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATAGTGCTATTACTGAGTTCTCTTCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATAA 1122 43.76 MSCNEKNRGVNDRETEHPVLTKAHQKPVIQNGSITAQHLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNEIVAIKVLHRGSTPEERAALESRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAIDFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDISPELAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPPPSQSSPSSPKSDTTETATTSNSAITEFSSRARGKFGFLRQLFAAKRAKNSQ* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27546469 27549623 + Chy4G090270.1 Chy04g02309 226208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02309 373 SUPERFAMILY Protein kinase-like (PK-like) 50 347 IPR011009 -
Chy04g02309 373 MobiDBLite consensus disorder prediction 322 347 - -
Chy04g02309 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Chy04g02309 373 Gene3D Transferase(Phosphotransferase) domain 1 135 352 - -
Chy04g02309 373 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Chy04g02309 373 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02309 373 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
Chy04g02309 373 CDD STKc_MAP3K-like 58 313 - -
Chy04g02309 373 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Chy04g02309 373 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Chy04g02309 373 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Chy04g02309 373 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Chy04g02309 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 24 352 - -
Chy04g02309 373 PANTHER SERINE-THREONINE PROTEIN KINASE 24 352 - -
Chy04g02309 373 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02309 373 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01420 Chy-Chr4:20838762 Chy04g02309 Chy-Chr4:27546469 2.42E-131 dispersed
Chy04g02309 Chy-Chr4:27546469 Chy09g00366 Chy-Chr9:3200310 1.36E-148 dispersed
Chy04g02309 Chy-Chr4:27546469 Chy02g02618 Chy-Chr2:29333915 7.09E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71245 PF07714 PK_Tyr_Ser-Thr 8.70E-62 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02309 - - csv:101223101 721.079