Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02318 ATGCTTTTCAAACTATTCCTCATTCTTGTCTTAGCTGCTGCCGGCGTTTCTGCTGTAGACACTGCTTTCAATGATGACGTTCTAGGATTGATAGTGTTCAAAGCTGGCCTTCAAGATCCCATGGGTAAACTGGTCACATGGAACGAAGACGACGAAACACCCTGTAACTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAACTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATCGGTCGTGGACTCTTGAGGTTGCAATTCCTTCAAATTCTTTCACTTGCCAACAACAACTTCACTGGCACAATCAACTCTGCTCTTTCTCACCTTGGAAATTTGCAAGTTATTGACTTGAGTGACAACAGTTTATCTGGACCCATTCCTGAACAACTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAATATCCCTCAGTCATTAACCTCTTGCTTCTCTCTGGAGCTTCTCAACTTCTCCTCCAACCACCTCTCTGGAACATTGCCTTCTGGGTTATGGTATTTGAGAGAGCTCCAGTCTCTGGATTTGTCTGACAACTTGCTTGAGGGGCAAATTCCTACTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTTCACAAGAATCGATTGTCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTGCTTCTAAAATCACTCGATTTTAGTGAGAATATCCTTTCTGGGGGTCTTCCAGAGTCGATGCAGATGCTCAGTTCTTGCACTTACCTGAATTTACGTGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCCAATAACTTTTCCGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTCTTGAAGAAGTTTAATGTGTCCACAAACTATTTAACTAGAAACTTGCCAGAATTCGTGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCGTTTGACTGGCAATCTCCCTATATGGATCTTTAAGGCAGCTATGCCAAGTGTTCCATTTTCTTCGTACAGGTTGGGAGAAAACCTTTCATCTCCAGCCTCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATATGTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTGGTAACTTGCAGTTGCTTAACATATCTAGAAACCATCTCGTGGGTTCTATTCCAAGGAGCATTGGTGAACTAAAATCAGCATATGCACTTGACTTCAGTGACAATCAATTAAGCGGAAGCATTCCTGCTGAAATTGGGGGAGCGATCTCACTCAAGGAGTTAAGGCTGGAGAAGAACTTCCTCACTGGGGAAATCCCAATCAAGATTGGCAAATGCCCGTTGTTAACATCATTGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCCGTTGCAAATCTTTCCAATCTTGTAGATGTAGACTTGTCTTTCAACAAACTATCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTTAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGTGGCTTCTTCAACGCTATATCTCCCTTGTCCATATCACATAACCCATCTCTTTGTGGCGCTGTTGTCAATAGGTCATGCCCATCCGTCCATCCAAAACCGATCGTCCTAAACCCAAATTCTTCTGATGCCAACGGAAATTCCCCCTCCCACAACCACCATCATGAGATCATACTAAGCATATCTTCCATTATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCCGAGCCAGGTCCTCACAGTCACAGTCTGCTGCTCTTGTATTATCTGTCCGGGAGGACTTTAGCTGCTCCCCAAAAACTAATCCGGACTATGGAAAGCTCGTCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTTGGTCGAGGTGGATTTGGGGTAGTTTACAAAACAGTGCTTCGAGATGGGTATTTAGTTGCAATCAAGAAGTTAACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTGATTTATGAATATGTCACCAATGGAAGTTTGTATAAGCATCTACACGACAGAACTGGCGACGACTACTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAATATCATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGTAAACCAAAAGTAGGGGACTATGGGTTGGCAATGTTATTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTAGGATACATGGCTCCTGAGTTTGCCTGCAAGACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATTCTGGTTTTGGAAGTGGTGACGGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGAAATGGTGAGGGTAGCTCTGGATGAAGGGACAGTGGAACGATGTGTTGATGAGAGGCTCCAATTGAACTTCCGCGTTGAAGAAGCTATTCCGGTAATGAAACTGGGTTTGATATGTGCATCTCAAGTACCATCGAACAGACCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCTCCCTCTGAAGTTGATGAGGAGTTGGAATGA 2880 43.3 MLFKLFLILVLAAAGVSAVDTAFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIGRGLLRLQFLQILSLANNNFTGTINSALSHLGNLQVIDLSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLELLNFSSNHLSGTLPSGLWYLRELQSLDLSDNLLEGQIPTGIQNLYDLRFVSFHKNRLSGKLPEDIGGCLLLKSLDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQFLKKFNVSTNYLTRNLPEFVANCNNLLSIDASHNRLTGNLPIWIFKAAMPSVPFSSYRLGENLSSPASFQGLQVLDLSSNMFSGHIPSNVGELGNLQLLNISRNHLVGSIPRSIGELKSAYALDFSDNQLSGSIPAEIGGAISLKELRLEKNFLTGEIPIKIGKCPLLTSLILSHNNLTGSIPAAVANLSNLVDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNAISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDANGNSPSHNHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSQSAALVLSVREDFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGYLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVTNGSLYKHLHDRTGDDYCLSWRQRFKIVLGMAKGLAYLHHNNIIHYNLKSTNVLIDSSGKPKVGDYGLAMLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCEMVRVALDEGTVERCVDERLQLNFRVEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE* 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27593091 27596127 - Chy4G090360.1 Chy04g02318 226217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02318 959 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Chy04g02318 959 SUPERFAMILY L domain-like 374 560 - -
Chy04g02318 959 ProSiteProfiles Protein kinase domain profile. 675 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02318 959 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Chy04g02318 959 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Chy04g02318 959 Gene3D Ribonuclease Inhibitor 279 360 IPR032675 -
Chy04g02318 959 Gene3D Transferase(Phosphotransferase) domain 1 752 958 - -
Chy04g02318 959 SUPERFAMILY L domain-like 41 350 - -
Chy04g02318 959 SMART LRR_typ_2 187 210 IPR003591 -
Chy04g02318 959 SMART LRR_typ_2 521 545 IPR003591 -
Chy04g02318 959 SMART LRR_typ_2 90 113 IPR003591 -
Chy04g02318 959 SMART LRR_typ_2 401 425 IPR003591 -
Chy04g02318 959 SMART LRR_typ_2 114 138 IPR003591 -
Chy04g02318 959 SMART LRR_typ_2 283 307 IPR003591 -
Chy04g02318 959 SMART LRR_typ_2 497 520 IPR003591 -
Chy04g02318 959 SMART LRR_sd22_2 187 213 - -
Chy04g02318 959 SMART LRR_sd22_2 497 523 - -
Chy04g02318 959 SMART LRR_sd22_2 283 309 - -
Chy04g02318 959 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 3 950 - -
Chy04g02318 959 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Chy04g02318 959 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Chy04g02318 959 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515
Chy04g02318 959 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 950 - -
Chy04g02318 959 Gene3D Ribonuclease Inhibitor 367 570 IPR032675 -
Chy04g02318 959 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Chy04g02318 959 SUPERFAMILY Protein kinase-like (PK-like) 678 952 IPR011009 -
Chy04g02318 959 Pfam Protein tyrosine and serine/threonine kinase 677 944 IPR001245 GO:0004672|GO:0006468
Chy04g02318 959 Coils Coil 954 959 - -
Chy04g02318 959 Gene3D Phosphorylase Kinase; domain 1 664 751 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02318 Chy-Chr4:27593091 Chy10g00309 Chy-Chr10:7756346 0 dispersed
Chy04g02318 Chy-Chr4:27593091 Chy12g00907 Chy-Chr12:14466675 3.50E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71247 PF07714 PK_Tyr_Ser-Thr 1.80E-41 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02318 - - csv:101222148 1814.28