Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00006 ATGTTTGACTCAATTAATTCAGAAACAACTCTTGTTTACGAAGCCGAGAATGATCCCAACAGATATGGCACTCCACCAGCACAGAAGGAGGTAGTTGATGCGCTGCCCACCGTGAGGGTTGAACTTGAGGGGGATAGCCGTTTGCAATGTTCAGTGTGTTTGGATGAGTTTGAGGTGGATGAAGAAGCCAAGGAGATGCCATGTAAGCATAAATTTCATACAGGTTGTATTCTGCCATGGCTGGAGCTGCATAGTTCGTGCCCAGTTTGTAGGCATCAATTGCCTGGGGATGAATCCAAGCGTGACGTTGATGGTGGATCTGCTGCCAGGTTCATGAGCGACCTCAATAATGGTAATGGCAATGGCAGCGGGGAGATTGAGGGGAGAAATTCATCTGAGTCTGGGAGGAGGTTTTCGTTTCCATGGCCTTTTAATGGCTTGTTTACTTCCCAAGGAAACTCCTCGGCTGGAAGTGCAAGTGATTCTCAAAGGGATCACACTTCCATTTGA 510 47.45 MFDSINSETTLVYEAENDPNRYGTPPAQKEVVDALPTVRVELEGDSRLQCSVCLDEFEVDEEAKEMPCKHKFHTGCILPWLELHSSCPVCRHQLPGDESKRDVDGGSAARFMSDLNNGNGNGSGEIEGRNSSESGRRFSFPWPFNGLFTSQGNSSAGSASDSQRDHTSI* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45088 50587 + Chy5G090520.1 Chy05g00006 226233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00006 169 MobiDBLite consensus disorder prediction 1 25 - -
Chy05g00006 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 147 - -
Chy05g00006 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 97 IPR013083 -
Chy05g00006 169 ProSiteProfiles Zinc finger RING-type profile. 50 91 IPR001841 -
Chy05g00006 169 SMART ring_2 50 90 IPR001841 -
Chy05g00006 169 MobiDBLite consensus disorder prediction 97 169 - -
Chy05g00006 169 Pfam Ring finger domain 49 91 IPR001841 -
Chy05g00006 169 MobiDBLite consensus disorder prediction 112 169 - -
Chy05g00006 169 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 147 - -
Chy05g00006 169 SUPERFAMILY RING/U-box 39 95 - -
Chy05g00006 169 CDD RING-H2_RNF181 49 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00006 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101216515 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02573 Chy-Chr2:28940268 Chy05g00006 Chy-Chr5:45088 2.01E-14 dispersed
Chy05g00006 Chy-Chr5:45088 Chy12g01365 Chy-Chr12:17880222 1.84E-37 dispersed
Chy11g00925 Chy-Chr11:12671040 Chy05g00006 Chy-Chr5:45088 1.35E-08 dispersed
Chy12g01367 Chy-Chr12:17887206 Chy05g00006 Chy-Chr5:45088 7.44E-17 dispersed
Chy05g00006 Chy-Chr5:45088 Chy04g02163 Chy-Chr4:26740824 5.55E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00006 Chy_Chr05 FPKM 5.808375 6.505891 0.502605 0.546689 23.048119 21.825216 19.416433 1.523465 1.524266 1.303917