Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00009 ATGTTGGATTATCCATCCGATACGGCTTACTCACCACCCAACAAGTTGGAGGAGTTTCCTTCCTCTTCCACTAGGAAATGGCTTTGCCTCCAAATCCCCTCTTTCAAAACCGACATTGGACTCGGAGATTCCCATGATGCTGACCAACCTCACGAACAGTATCAAGTGGAGCAGGAGCAGCCTCATGGTTTGAAATTTGCGCCTGGAGCTTCTGCCCACAGGACTCGACTCTTCACCGTTGGGGATAAAAAAAACACTAATGAAACTAAAAGCTTTGTTCTTCCTGATACTCCTTCCCTTGCGAGCTTGGAGTTGCTCCTGAATTCAACAAGCTTAAGAGCTTACGGGCTGATTGGGGAGAGGAGTTGGTTCCCGTTTCATGCTAGTTCAATTATTCCCCATGTAAACGATTCCATGCCACGCCTCTGCTGTCAAGCCTCGCTTCAGGCTTCTACTTCTTTTTCTGAAAATCGTGTGGCTGAAGAGAGGAGTTCTATTTCAATATCTTCCATTGAGATGATTCCAAAGATTGACAAGAGCGGCAAATTTTGCAGTCCGAGAGCTGCGAGAGAGCTTGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCTGTTCGGCTCTTTGAGAAAAGGTTAAATGCCCGACGAGAATCAGGATATGAATTTGACAAGACATCATTGATGGAATATAATCATATGAGCTTTGGAGGTCCGCCAGTGACTGTGGAAACAATTGAAGAGGCAGATGAGCTCTTACGTAAGGATGAAAGGGATTCTACAATTGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGGGGACGGATGGGACAGTCGTGCGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGATGGATTCTAGAGCTTTGTATTCTCCACTTGGCCATGTCTGAAATAACGGTTATTGGAACAAGGAATCAAATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAGATTGATTCAACGCCTGCTCGAGAGAAGTAA 1155 44.76 MLDYPSDTAYSPPNKLEEFPSSSTRKWLCLQIPSFKTDIGLGDSHDADQPHEQYQVEQEQPHGLKFAPGASAHRTRLFTVGDKKNTNETKSFVLPDTPSLASLELLLNSTSLRAYGLIGERSWFPFHASSIIPHVNDSMPRLCCQASLQASTSFSENRVAEERSSISISSIEMIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKMVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGWILELCILHLAMSEITVIGTRNQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTPAREK* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 71545 90589 + Chy5G090550.1 Chy05g00009 226236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00009 384 Gene3D - 186 381 IPR035926 -
Chy05g00009 384 MobiDBLite consensus disorder prediction 1 20 - -
Chy05g00009 384 Pfam NusB family 291 371 IPR006027 GO:0003723|GO:0006355
Chy05g00009 384 PANTHER N UTILIZATION SUBSTANCE PROTEIN B-RELATED 149 383 IPR011605 GO:0006353
Chy05g00009 384 SUPERFAMILY NusB-like 184 374 IPR035926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00009 - - - csv:101216754 536.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00009 Chy-Chr5:71545 Chy05g00011 Chy-Chr5:103816 5.70E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g16 . . . . Bpe01g00360 . . . . . . . . . . . . . . . . . . . Cla02g02365 Cam02g2515 Cec02g2561 Cco02g2592 Clacu02g2490 Cmu02g2420 Cre02g2739 . . Cone18ag0009 Cone11ag1584 . . Chy05g00009 . Blo08g00157 Blo14g00329 . . Bpe08g00326 . Bma07g00316 Bma11g00344 . . . . . . . . . Bhi10g00484 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009096 1 2 2 2 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00009 Chy_Chr05 FPKM 28.796169 31.930729 7.02926 5.895022 71.538017 71.715744 69.765816 0.517204 0.275953 0.235295