Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00027 ATGCCAACGAGTTACAGGCCTGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTGCTATTTCTACGTCGCCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAACTTAGCCATAATGTAGTGAAGTTCAGATTCTCTCTTCCGACTCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGCTGCAGAGGAAAAGATAGCCAAAGTGAAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACATAGATGTTGGATACTTTGAGTTGGTCATTAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGAACCTAATGAAGTAGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATGAAGTGGATAGCACCAACGTGCATCTTATCTATGCTAATGTTACTTATGAAGACATTCTTCTGAAGGAAGAATTGGATAGTCTTGCGACTACGTTCCCTACCCGTTTTTCTATCTACTATGTGCTCAATCAGCCTCCAGAAGAATGGGATGGTGGTGTTGGCTTTGTAACTGAGGAAATGATACGTCTACACTGTCCTGCGCCATCCCCTAATGTCCGGATTTTGAGGTGCGGACCACCCCCGATGAACAAAGCTATGGCTGCTTACCTGAACACTATTGGCTACACTTCTCGGATGCAGTTCCAGTTCTAA 837 46.12 MPTSYRPELLTVAVAVVAVGVATACYFYVAKKSKPKGCLDPDNFKEFKLVKRTQLSHNVVKFRFSLPTPTSILGLPIGQHMSCRGKDSQSEDVVKPYTPTTLDIDVGYFELVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENEVDSTNVHLIYANVTYEDILLKEELDSLATTFPTRFSIYYVLNQPPEEWDGGVGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGYTSRMQFQF* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 194281 197184 + Chy5G090730.1 Chy05g00027 226254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00027 278 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Chy05g00027 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Chy05g00027 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Chy05g00027 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Chy05g00027 278 CDD cyt_b5_reduct_like 47 278 - -
Chy05g00027 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 3 278 IPR001834 GO:0016491
Chy05g00027 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Chy05g00027 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Chy05g00027 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Chy05g00027 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Chy05g00027 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Chy05g00027 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Chy05g00027 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Chy05g00027 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Chy05g00027 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 272 IPR039261 -
Chy05g00027 278 Gene3D Translation factors 34 135 - -
Chy05g00027 278 SUPERFAMILY Riboflavin synthase domain-like 38 148 IPR017938 -
Chy05g00027 278 Gene3D - 136 278 IPR039261 -
Chy05g00027 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 3 278 - -
Chy05g00027 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00027 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 556.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00027 Chy-Chr5:194281 Chy08g00202 Chy-Chr8:4773222 2.11E-145 dispersed
Chy05g00027 Chy-Chr5:194281 Chy07g00682 Chy-Chr7:6605252 5.31E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00372 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Chy05g00551 . 1 135 NADPH P450 reductases AT5G53560 65.9 9.9e-50 193.0
Chy04g00851 . 4 134 NADPH P450 reductases AT5G53560 63.4 1.5e-45 179.1
Chy09g01458 . 527 638 NADPH P450 reductases AT5G53560 74.1 8.1e-44 173.3
Chy06g00372 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.4e-48 186.8
Chy05g00551 . 1 134 NADPH P450 reductases AT5G48810 62.5 1.3e-47 186.0
Chy04g00851 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.7e-44 175.6
Chy06g00372 . 22 135 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Chy05g00551 . 13 135 NADPH P450 reductases AT2G32720 73.4 4.2e-48 187.6
Chy04g00851 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.1e-40 162.9
Chy09g01458 . 533 636 NADPH P450 reductases AT2G32720 68.3 3.0e-38 154.8
Chy03g00719 . 1 130 NADPH P450 reductases AT1G26340 54.5 6.7e-38 153.7
Chy08g00202 CCT 2 282 NADPH P450 reductases AT5G17770 81.5 2.2e-131 465.3
Chy04g01700 CCT 2 281 NADPH P450 reductases AT5G17770 76.4 4.4e-124 441.0
Chy05g00027 . 6 279 NADPH P450 reductases AT5G17770 75.2 3.9e-117 417.9
Chy06g00372 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.4e-51 199.1
Chy05g00551 . 1 135 NADPH P450 reductases AT5G53560 65.9 9.9e-50 193.0
Chy04g00851 . 4 134 NADPH P450 reductases AT5G53560 63.4 1.5e-45 179.1
Chy09g01458 . 527 638 NADPH P450 reductases AT5G53560 74.1 8.1e-44 173.3
Chy06g00372 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.4e-48 186.8
Chy05g00551 . 1 134 NADPH P450 reductases AT5G48810 62.5 1.3e-47 186.0
Chy04g00851 . 2 132 NADPH P450 reductases AT5G48810 60.9 1.7e-44 175.6
Chy06g00372 . 22 135 NADPH P450 reductases AT2G32720 84.2 5.2e-51 197.2
Chy05g00551 . 13 135 NADPH P450 reductases AT2G32720 73.4 4.2e-48 187.6
Chy04g00851 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.1e-40 162.9
Chy09g01458 . 533 636 NADPH P450 reductases AT2G32720 68.3 3.0e-38 154.8
Chy03g00719 . 1 130 NADPH P450 reductases AT1G26340 54.5 6.7e-38 153.7
Chy08g00202 CCT 2 282 NADPH P450 reductases AT5G17770 81.5 2.2e-131 465.3
Chy04g01700 CCT 2 281 NADPH P450 reductases AT5G17770 76.4 4.4e-124 441.0
Chy05g00027 . 6 279 NADPH P450 reductases AT5G17770 75.2 3.9e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00027 Chy_Chr05 FPKM 2.494186 2.482255 1.931684 2.108463 8.309891 8.417724 8.367023 1.675541 1.618055 1.557479