Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00039 ATGGAGGATTATGGTTTCGAGTATTCGGACGATGAGCCTGAAGAGCAGGACGTTGATATTGAAAATCAATACTACAACTCTAAAGGGTTGGTGGAAACGGACCCCGAAGGAGCTCTTGCAGGGTTTGCTGAGGTGGTACGCATGGAACCCGAGAAGGCAGAGTGGGGCTTCAAGGCTCTCAAGCAAACTGTCAAGCTTTATTATAGACTGGGGAGGTATAAAGAAATGATGGATTCATATCGAGTGATGCTTACATACATAAAATCAGCAGTGACCCGTAATTATAGTGAAAAATGTATAAACAATATCATGGATTTTGTATCTGGATCAGCAAGTCAGAGTTTTGGTCTCTTGCAAGAATTTTATCAAACCACTTTGAAAGCCCTTGAAGAGGCAAAGAATGAGAGGCTTTGGTTCAAAACTAATTTAAAGCTCTGCAAGATTTGGTTTGATATTGGTGAATATGGTCGCATGATTAAGATTTTGAAGGAACTCCACAAGTCCTGTCAAAGAGAAGATGGTACAGATGATCAAAAGAAAGGAAGTCAACTTCTGGAAGTGTATGCCATTGAAATTCAAATGTATACTGAGACTAAAAATAACAAAAAGCTCAAGCAATTATACCAGAAAGCTCTTGCCATCAAGTCAGCAATACCCCATCCACGGATTATGGGAATAATTAGGGAGTGTGGAGGAAAGATGCACATGGCAGAACGTCAATGGCCAGAAGCAGCGACTGATTTCTTTGAGGCTTTTAAGAACTATGATGAAGCTGGGAACCAAAGGCGTATCCAGTGCCTGAAATATCTAGTTTTGGCTAATATGCTGATGGAATCCGAAGTCAATCCATTCGATGGTCAAGAGGCAAAGCCGTATAAAAATGACCCCGAGATTTTGGCAATGACTAATCTTATTGCAGCATACCAAAGGAATGAGATACTTGAGTTCGAGAAGATTCTCAAGAGCAATAGAAAGACAATAATGGATGATCCATTCATTCGAAATTACATTGAAGATCTGTTGAAGAATGTCAGAACCCAAGTGTTACTTAAACTTATCAAGCCTTACACAAGAATCCGGATTCCATTTATATCAAAGGAACTCAATGTGCCGGAGAAAGATGTTGAACAATTATTAGTTTCACTAATCCTGGATAATCGCATTGATGGTCACATTGATCAAGTCAACAGACTTTTGGAGCGTGGTGACAGGTCAAAGGGAATGAAGAAGTATACTGCCATAGATAAATGGAACACTCAGTTGAAATCCCTCTTTCAAACTGTCAGCAACCGAGACAAGAAGGGCTCCGTTTGCAAGTCTAGATGGAGTGTGATGGAGGCTATTGGAGTTGTGGTGGAAGGACTTGGTGGTTTATGCAATAAAGAATATGCCCAAAGCATAATACTACATAATTTGGCCTTTCAGCAATCTCAGGAGTCGTTAATTTCTGCTCTGAAGCGGCTACATAATTTCTCTTCTTCATCCTCACTGTCTTTAAAGAAGTTCTGCTGGCTTGACATGAAGAGGGATTTGTCAAACTTCCCAGATGAATGCACAGAGCACAGTCTTGTATGCCCCTTGCCAATTCCAGCTAATATGAGGAGTTTTCTCTTTGGACTTCTTGGAATAGAACAGTACAAGAGCATGGAAAGAGCGTTAGAAGATTTTACATCCATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATGGGTCGAACAATTGGCGAAGGTACATTTGCAAAAGTGAAATTTGCCAAAAATTCTGAGACTGGGGAACATGTAGCAATAAAGATCCTTGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATAAAGCGGGAAATTGCCACGATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACAAAGATATTTATTGTTTTGGAGTTTGTTACTGGTGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGAGATCTTAAGCCAGAAAATTTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGACTTTGGCTTGAGTGCATTATCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGGACTCCAAACTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTCGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATGAACCTTTATAAAAAGATCTCGGCTGCTGAGTTTACTTGTCCTCCATGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCAGAAATTTTGGAAGATGAATGGTTTAAAAAAGATTATAAACCCCCTGTTTTTGAGGAGCAGAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTTAAAGATTCAGAAGAACACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCAAAGGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGTTCAGCTAATGAAATTGTAAATAAGATCGAGGAAGCTGCCAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGGAACCTTAATGTTGCGACAGAGATTTTGCAAGTCGCACCTTCTGTCCATGTGGTTGAGATGCGAAAAGCAAAAGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTTTCCACCTCTCTGGAGGATGTTGTTTGGAAGACTGAGGAAGACATGCAAGAAACAAAGTGA 3009 40.25 MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWGFKALKQTVKLYYRLGRYKEMMDSYRVMLTYIKSAVTRNYSEKCINNIMDFVSGSASQSFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDIGEYGRMIKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWPEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSKGMKKYTAIDKWNTQLKSLFQTVSNRDKKGSVCKSRWSVMEAIGVVVEGLGGLCNKEYAQSIILHNLAFQQSQESLISALKRLHNFSSSSSLSLKKFCWLDMKRDLSNFPDECTEHSLVCPLPIPANMRSFLFGLLGIEQYKSMERALEDFTSMRRSGVNQPKVKRLVGKYEMGRTIGEGTFAKVKFAKNSETGEHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEQKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK* 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 263124 278621 - Chy5G090850.1 Chy05g00039 226266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00039 1002 CDD STKc_SnRK3 575 830 - -
Chy05g00039 1002 Pfam NAF domain 871 930 IPR004041 GO:0007165
Chy05g00039 1002 ProSitePatterns Protein kinases ATP-binding region signature. 582 605 IPR017441 GO:0005524
Chy05g00039 1002 ProSiteProfiles NAF domain profile. 869 893 IPR018451 GO:0007165
Chy05g00039 1002 Pfam PCI domain 300 400 IPR000717 -
Chy05g00039 1002 PANTHER - 1 432 - -
Chy05g00039 1002 Gene3D - 58 434 - -
Chy05g00039 1002 ProSiteProfiles Protein kinase domain profile. 576 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00039 1002 Pfam Protein kinase domain 576 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00039 1002 SUPERFAMILY Protein kinase-like (PK-like) 572 859 IPR011009 -
Chy05g00039 1002 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 335 417 - -
Chy05g00039 1002 CDD CIPK_C 875 989 - -
Chy05g00039 1002 SMART serkin_6 576 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00039 1002 Gene3D Kinase associated domain 1, KA1 868 993 - -
Chy05g00039 1002 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 1 432 - -
Chy05g00039 1002 SUPERFAMILY Winged helix DNA-binding domain 329 405 IPR036390 -
Chy05g00039 1002 Gene3D Transferase(Phosphotransferase) domain 1 656 858 - -
Chy05g00039 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Chy05g00039 1002 ProSiteProfiles PCI domain profile. 237 406 IPR000717 -
Chy05g00039 1002 SMART PINT_4 335 417 IPR000717 -
Chy05g00039 1002 Gene3D Phosphorylase Kinase; domain 1 565 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00122 Chy-Chr2:884175 Chy05g00039 Chy-Chr5:263124 0 dispersed
Chy03g01288 Chy-Chr3:15914927 Chy05g00039 Chy-Chr5:263124 0 dispersed
Chy05g00039 Chy-Chr5:263124 Chy06g00062 Chy-Chr6:425939 0 dispersed
Chy11g01238 Chy-Chr11:18500067 Chy05g00039 Chy-Chr5:263124 1.14E-16 dispersed
Chy11g01611 Chy-Chr11:22657667 Chy05g00039 Chy-Chr5:263124 3.31E-117 dispersed
Chy11g01779 Chy-Chr11:24148656 Chy05g00039 Chy-Chr5:263124 1.85E-47 dispersed
Chy11g01975 Chy-Chr11:25721564 Chy05g00039 Chy-Chr5:263124 2.56E-86 dispersed
Chy05g00039 Chy-Chr5:263124 Chy12g00355 Chy-Chr12:3797110 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71252 PF00069 Pkinase 8.60E-72 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00039 K12176 - csv:101221173 885.945