Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00073 ATGCTGGCTTCTAATTCTTATCGCAGCACAGATGCCAAACTCAGTAAAGAGGAAAAGAGAAAGGAAAAAAAAATTGGTGCTTCTGTTGGAGATGATTGTATGAGTACCATAATAGAATTCAGAGAGAAGGGGATGTATCAGCAACCCAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCAATAGATTCTCAACCAGCAACTTCTCGTCCTGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGCTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGCCACACTCTTTGTTCAAGCTGCAAGACAAGGGTTCAGAATTGCTGCCCTACCTGTCGGCATGAGCTTGGGAACATAAGGTGCCTAGCATTGGAAAAGGTGGCCGAGTCGCTTGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACACGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCATGTAACTGGTGACATTCCATCCCTCGTCATGCATCTCAAGGATGATCACGAGGTGGATATGCATGATGGATGTTCCTTCAGTCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTAACTATTCTTATGAAAAATAAAAGCAAAGAAGAAGCAATTTCATGTAATGAACATCCTCCTGATTTCTCATTTGATCCAATTCAGGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCATTTCGCCTAGGAACAGCACCCGTTTACATGGCATTCCTCCGGTTCATGGGTGACGACAACGAGGCAAAACAATTCTCATACAGTCTTGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCAAGAAGTATTCGCGATAGCCATCGGAAGGTTCGAGACAGTCATGATGGACTAATTATTCAGAGGAAATTGGCATTATTTTGCTCTGGAAACGAGGGGATGGAACTGAAGTTAAAGGTTACAGGACGAATATGGAGAGTGAGGTGA 1161 43.15 MLASNSYRSTDAKLSKEEKRKEKKIGASVGDDCMSTIIEFREKGMYQQPKSREEHASSAASFCKEVTELRLTSIDSQPATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKTRVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECHVTGDIPSLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTILMKNKSKEEAISCNEHPPDFSFDPIQVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDNEAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVR* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 525004 527238 - Chy5G091190.1 Chy05g00073 226300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00073 386 ProSiteProfiles Zinc finger SIAH-type profile. 164 224 IPR013010 GO:0008270
Chy05g00073 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 60 255 - -
Chy05g00073 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 279 384 - -
Chy05g00073 386 SUPERFAMILY RING/U-box 93 151 - -
Chy05g00073 386 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 266 379 IPR008974 GO:0005515
Chy05g00073 386 CDD RING-HC_SIAHs 109 147 - -
Chy05g00073 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 219 IPR013083 -
Chy05g00073 386 SUPERFAMILY TRAF domain-like 164 254 - -
Chy05g00073 386 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 60 255 - -
Chy05g00073 386 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 279 384 - -
Chy05g00073 386 MobiDBLite consensus disorder prediction 1 26 - -
Chy05g00073 386 MobiDBLite consensus disorder prediction 11 26 - -
Chy05g00073 386 SUPERFAMILY TRAF domain-like 274 382 - -
Chy05g00073 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 163 IPR013083 -
Chy05g00073 386 Pfam Seven in absentia protein family 153 379 IPR018121 GO:0005737|GO:0006511|GO:0007275
Chy05g00073 386 ProSiteProfiles Zinc finger RING-type profile. 111 147 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00073 Chy-Chr5:525004 Chy10g01356 Chy-Chr10:17806951 4.99E-150 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00073 K04506 - csv:101213438 673.7