Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy05g00118 | ATGGATTCGTCTCACCCATCGTCGTCCCCACCGGAGCTTGATCTTCACACTCTCAAACCCATCAAGGTACTTGGAAAGGGAGCCATGGGGACTGTATTTCTCGTCCACGATCGAATTTCTGATGAGTCTGCTCATTTCCCCTTTGCTCTTAAGGTCGTTGAGAAATCCTCTTTTGCTTCCAAAGTCGACGCCGAGAGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCTTTCCCTAAACCACCTCACCCTTTTCTTCCCGACATTGTTGGTTCTTTCGAATCCGATGAGTTTTTGGGTTGGGCTGTTCCGTACTGTCCCGGGGGCGATCTTAACGTCTTGCGTTACCGTCAATTGGACCGGGTTTTCTCTCCGGCTGTCATTCGTTTTTATTTGGCGGAGATCGTTTGTGCGCTCGACCACCTTCATAGTATGGGGATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCAGGTCACGTCACTCTCACCGACTTTGATCTGTCGCGTACTTTAACACGTAGAACAGTAAAAGACGTTGTCTCTCTTGAAAACACCGGTCACGAGAAGCCGCCGATCGCCGTCAGACGAAAACCGGGGAGAAACTTGACACGGTGGATCATGGCAACATCCAACGTTAAAAACGGCTTAAAAAAGGCTAAATCCGCTCGGGTTAGTCCGGTGAGTCGTCGGAAGTCGAGTTTCACCAATGGCGAACGGTCGAATTCATTCGTCGGAACGGAGGAGTATGTCTCACCGGAAGTTGTTAAAGGAGACGGACATGAATTCGCCGTTGATTGGTGGGCTCTAGGGATCCTCACGTACGAGATGCTCTACGGGACAACACCGTTCAAGGGGAAGAACCGGAAAGAGACGTTTCGAAACGTTTTGGTCAAATCTCCGGAGCTGATCGGAAAGCGATCGGATTTAACGGATTTGATCGAAAGGTTGCTCGTGAAGGACCCCACGAAGCGGTTGGGGTACGGACGAGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGTGTTAAGTGGGACCTGTTAACGGAAGTAACGCGACCGCCATTTTTACCTCAACGTGAAGAAACGGAATGGACGGGGAATGTACGGCTGGGTTGTGTGAGTATAACGGAATACTTTCATAAAGAGAGATCGCCGCCTTCGTTTCCAGCGTCGCCGTCGGCAACAACACCGTCGACGTCATTCAGTTGGGAGAATAATAAGATGTCATTGACAGAGTTCTAA | 1266 | 49.92 | MDSSHPSSSPPELDLHTLKPIKVLGKGAMGTVFLVHDRISDESAHFPFALKVVEKSSFASKVDAERRARWEIQVLSRLSFPKPPHPFLPDIVGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRTLTRRTVKDVVSLENTGHEKPPIAVRRKPGRNLTRWIMATSNVKNGLKKAKSARVSPVSRRKSSFTNGERSNSFVGTEEYVSPEVVKGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKSPELIGKRSDLTDLIERLLVKDPTKRLGYGRGACEIKEHAFFNGVKWDLLTEVTRPPFLPQREETEWTGNVRLGCVSITEYFHKERSPPSFPASPSATTPSTSFSWENNKMSLTEF* | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 899509 | 900774 | - | Chy5G091640.1 | Chy05g00118 | 226345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy05g00118 | 421 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 51 | IPR017441 | GO:0005524 | |
Chy05g00118 | 421 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 111 | - | - | |
Chy05g00118 | 421 | Gene3D | Transferase(Phosphotransferase) domain 1 | 112 | 181 | - | - | |
Chy05g00118 | 421 | ProSiteProfiles | Protein kinase domain profile. | 18 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy05g00118 | 421 | SMART | serkin_6 | 18 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy05g00118 | 421 | PANTHER | FLIPPASE KINASE 1-RELATED | 13 | 393 | - | - | |
Chy05g00118 | 421 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 149 | 161 | IPR008271 | GO:0004672|GO:0006468 | |
Chy05g00118 | 421 | Pfam | Protein kinase domain | 241 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy05g00118 | 421 | Pfam | Protein kinase domain | 21 | 185 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy05g00118 | 421 | PANTHER | SERINE/THREONINE-PROTEIN KINASE UCNL | 13 | 393 | - | - | |
Chy05g00118 | 421 | Gene3D | Transferase(Phosphotransferase) domain 1 | 243 | 366 | - | - | |
Chy05g00118 | 421 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 409 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01413 | Chy-Chr1:19406602 | Chy05g00118 | Chy-Chr5:899509 | 1.64E-96 | dispersed | |
Chy05g00118 | Chy-Chr5:899509 | Chy02g00475 | Chy-Chr2:2924268 | 1.03E-76 | dispersed | |
Chy05g00118 | Chy-Chr5:899509 | Chy08g00920 | Chy-Chr8:16632692 | 8.53E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
71255 | PF00069 | Pkinase | 1.50E-29 | CL0016 | Chy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy05g00118 | - | K08286 | csv:101207338 | 826.239 |