Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00119 ATGGGATCCATGAATTCAAACAATTGGCTTTCATTTCCACTTTCACCCACCAATCCTTCTTTGCCACCACATCTTCAAACCACAACTCATCATTCCCATCATTTCTCTTTGGGAAATATGGAGAATGATCATAATATGGATATCCCATTTCAAACTCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAAGCAGAAAATGAAACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGTAATGATACAGATTATTTGTTCCCAATCACAAGATTAGTTCCTCTTCATCATCAACAACAACAACAACAAACTCCTCCTCCTCCTCCTCCTCCTTCTAATATAAATCTTGACTCTTCTTCTTCTTCTAACTTTGACCTTCAAGATAATTCCAACTGTTTACAATCTTTGACTCTCTCGATGGGTAGTGGTAAACCCTCTCCTTGTGAAACAACCTCCACCCCTGATAATAATACCACATCCAACAACAGTAACAACAACAGCAATACCACTCTCGACGTCACCCCTCGAAGAACTTTGGACACTTTTGGTCAAAGAACTTCCATTTACCGTGGTGTAACCAGGCATAGATGGACCGGAAGGTATGAAGCGCATTTGTGGGATAACAGTTGTAGAAGGGAAGGGCAGTCAAGGAAGGGTAGGCAAGTCTATTTGGGTGGGTATGATAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCTGCATTGAAATATTGGGGAACATCCACAACCACAAATTTTCCTATCAGTAACTATGAGAAGGAGGTGGAGGAAATGAAGCACATGACCAGACAAGAATTTGTGGCTGCCATTAGAAGGAAAAGCAGTGGATTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAACATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATACGATATAGCGGCTATAAAATTCAGAGGGCTAAATGCAGTAACAAACTTCGATATGAGTCGTTACGATGTGAAAAGCATATTAGAGAGCAACACGCTTCCAATTGGTGGTGGTGCTGCAAAGCGACTAAAGGAGGCTCAAGCCGTGGAATCGTCTCGAAAGCGAGATGAAATGATTGCATTAGGTTCCTCTTCATCCTCCTCTTCTTGCTTCCAATATGGAACCTCTTCCTCTTCCACAACTAACTCTTCTCATTATCCTAATTTACTCCAACAACCAAATCTCAATATAGACCATCACCATCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCCTGACATTTCTCATTACAGTACTCACCATCCTTCCTCGTTCCACAACCCTTCTTCTTCTTACATCCACCATTCATCTGATCATTCCTCTTACCCTAACAACAACAACAATCATCCGTTTTACGGTGCTGGGTATCTTCATAATCATCCCGCTTTGCTTCACGGCATGATTAACATGAGCGGCGTAGGTGGTGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTTCTAGTTTGGACACTAATAATAATACTAATGCATTGAGTCATTTTGAGAGTAATAGTCATGGAGGGGGAGGGTATCTTGGGAATGCATTTGGGATTGGTTCTGCATCCGGTAGCACAGCGGAGGAATATGCCCTCGTTAAGGTTGACTATGACATGCCTAATTCCGGTGGCTACGGCGGTTGGACCGGGGATTCTGTCCAAGGTTCTAACGCTGGGGTTTTCTCCATGTGGAATGATTGA 1845 43.09 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHHSHHFSLGNMENDHNMDIPFQTHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVPLHHQQQQQQTPPPPPPPSNINLDSSSSSNFDLQDNSNCLQSLTLSMGSGKPSPCETTSTPDNNTTSNNSNNNSNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAVESSRKRDEMIALGSSSSSSSCFQYGTSSSSTTNSSHYPNLLQQPNLNIDHHHLQTQPLLSLQNHPDISHYSTHHPSSFHNPSSSYIHHSSDHSSYPNNNNNHPFYGAGYLHNHPALLHGMINMSGVGGGGGGGGGGGGGGGASSLDTNNNTNALSHFESNSHGGGGYLGNAFGIGSASGSTAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND* 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 911728 914689 - Chy5G091650.1 Chy05g00119 226346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00119 614 Pfam AP2 domain 202 260 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 Pfam AP2 domain 305 354 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 SUPERFAMILY DNA-binding domain 303 364 IPR016177 GO:0003677
Chy05g00119 614 MobiDBLite consensus disorder prediction 402 430 - -
Chy05g00119 614 MobiDBLite consensus disorder prediction 129 188 - -
Chy05g00119 614 MobiDBLite consensus disorder prediction 457 490 - -
Chy05g00119 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 613 - -
Chy05g00119 614 ProSiteProfiles AP2/ERF domain profile. 304 362 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 Gene3D AP2/ERF domain 304 364 IPR036955 GO:0003700|GO:0006355
Chy05g00119 614 Gene3D AP2/ERF domain 202 270 IPR036955 GO:0003700|GO:0006355
Chy05g00119 614 MobiDBLite consensus disorder prediction 392 430 - -
Chy05g00119 614 SMART rav1_2 304 368 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 SMART rav1_2 202 274 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 PRINTS Ethylene responsive element binding protein signature 344 364 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 613 - -
Chy05g00119 614 MobiDBLite consensus disorder prediction 110 188 - -
Chy05g00119 614 CDD AP2 303 364 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 ProSiteProfiles AP2/ERF domain profile. 202 268 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 CDD AP2 201 270 IPR001471 GO:0003700|GO:0006355
Chy05g00119 614 SUPERFAMILY DNA-binding domain 201 270 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00119 Chy-Chr5:911728 Chy05g00712 Chy-Chr5:9314823 2.85E-133 dispersed
Chy05g00119 Chy-Chr5:911728 Chy02g00817 Chy-Chr2:5154355 2.21E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17962 PF00847 AP2 1.10E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00119 K09285 - csv:101207097 1104.35