Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00122 ATGCCACCCAACGATGACATTGTTTTTATTTCCCGTTCTACGCTTAGAATTCCACACTTCCCTCCCTCTAGGTCGCATTCTAGTTTCAAATTTTGCTTCAAAAGTTTGGCTTCACAGTTCGATCAATCCTGTAAGTCAATATCCCATTTCATTGATTCGGTAAAGAGAGGGTCGAAATTGAGTCATTTCAACCACAGTTTTCCCCATTTGTGGCCACCAACTCTCCCCTTTTGTTCTTCAAAGAAGGTAACTCAGCAAGAGAATTCGACCAGTCGACGAGCGAGCTGGAATTGGGGGTCAGTTTTTGTTGAGAAATACCCTCTAATTTGTTCGGCGTCAATGTCGCTTATTCAGTTAGACATGTCGAGTAAGTCTGAGTCTGAGGATTCAGGAAGGCGACGGGGGATGGAGGACATGAGTACGGGGTTGGTTGGAAAATCATCTCTTCTTTGTTCAGCTTCATTGGCTTTGACGCGTTCTGACGAGTCGAGTCAGTCCGGTGGTTCGGAGAGTAAGGAATTGCCTCAAAAGGGGTATTCAGCTGCTCGGGTGGATGAGGAGAGGGTTCTAATCAGTGAGGTTCTCGTGAGAAATAAGGACGGTGAGGAGCTAGAGAGGAAGGACCTCGAGCTGGAGGTTTTCACCGCCTTGAAGGCGAGTCGACCTAACTCTGCGCTTACTGTACGCGAGGTTCAAGAAGATGTGCACAGGATCATCAATAGTGGATATTTCTACTCGTGCATACCTGTTGCAGTTGATACCAGAGATGGAATAAGATTAATATTTCAGGTAGAACCAAATCAAGAGTTTCAGGGATTGGTCTGTGAAGGCGCTAATGTCCTTCCAGCAAAGTTTCTGGAGGAAGCTTTTCGTGATGGCTATGGAAAAGTTGTCAATCTCAGGCATTTAGATGAAGTAATATCGTCCATCAATGGCTGGTATGGGGAACGTGGCCTTTTTGGCAGGGTATCAGCTGTAGATATTCTATCGGGGGGCATTCTTAGTTTACAAGTTTCTGAAGCCGAAGTAAATAACATTTCCATCCGATTTCTTGACAAAAAGACTGGCGAGCCAATTCCAGGAAACACCAGACCTGAGACAATACTCCGGCAGCTTACTACCAAGAAAGGACAGGTCTACAGTATGCTTCAAGGAAAAAGAGATGCAGAGACTGTCTTAACTATGGGGATCATGGAAGACGTCAGCATTATTCCCCAACCTGCAGCTGATGCTGGAAAGGTTGACATACTGATGAACGTGGTTGAGCGTCCAGGTGGAGGTTTCTCTGCTGGTGGTGGTCTATCATGTGGGAGCACTGGTGGTGCTGGCCTTCTTTCTACCCTTATTGGAAGTTTGGCATATTCCCACAGAAATCTTTTTGGGAGGAACCAGAAGCTCCATGTCTCCTTGGAGAAGGGACAAGTTGATTCCACTTTTCGCATAAATTACACAGACCCATGGATTGAAGGAGATGATAAGAGGACATCACGAACAATGATGGTTCAGAACTCAAGGACTCCAGGTACACTTGTCCATGGCGGTAGCAACCTGACTATTGTTCGGGTTACGGCTGGTTTGGAATTCAACCGCCCTATCAGGCCAACGTGGAGTGGTACAGCAGGACTTTATTTCCAGCGTGCTGGTGCTCAAGATGAAAAAGGAGAACCTATCTTAAAGGATAACATCAAATGTCCTCTCACTGCAAGTGGCAATGCTGTGGACAATATGTTACTGGCTAAACTTGAGGGTGTCTACACTGGTTCTGGGGACCATGGATCTTCCATGTTTGTTCTTAGCATGGAACAAGGGCTTCCCTTTTTGCCTGAATGGCTATGTTTTAATAGAGTGAATGCTCGTGCCAGAACTGGCATGGAACTTGGTTTCTCTCAGCTTCTTTTGAGTTTGTCTGGAGGTCATGTAGTTGGGAACTTCTGCCCGCATGAAGCATTTGCCATTGGGGGAACAAACAGCGTTAGAGGATATGAAGAAGGTGCTGTAGGCTCTGGTCGATCTTATGCTGTTGGATGTGGAGAGCTCTCTTTCCCCTTGTTTGGCCCTGTGGAAGGAGTCTTTTTTGCTGACTATGGAACTGATCTTGGATCGGGCGCATCTGTTCTAGGTGATCCTGCTGGGGCTAGGATGAAAACCGGAAGTGGATTTGGGTATGGGTTTGGCATCCGTCTGGAATCCCCTTTGGGTCCTCTTCGTCTTGAATATGCATTCAACGACAAAAATGGAGTTAAAGGGCTTCCAACTCCTTCTTCTTCTTCTACTAACTCTGATTTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATCAAGAAGATCACACCCATCAATTGCAACTTTCATCTAATAATTCTATTACTAGTAATAGTAATGGAGTTAATAAGGGTCAATATTGGATTCCAACTCCTACTCAGATTCTCATTGGTCCAACTCAATTCTCTTGCCCTCTTTGTTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGGAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGTTGAGGCTGCCATGTTACTGTTGTGCAATAGGATGCAGAAACAACATAGACCATCCAAGATCAAAGCCATTAAAAGACTTTAGAACACTTCAGACACATTACAAAAGAAAACATGGGATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTTAAAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAACTTTGGCATTGCACATGTGGCTCTGATTTTAAGCATAAAAGGTCTCTTAAAGATCATATCAAAGCCTTTGGACTTGGCCATGCTGCTTATGGGATTGATGATCATCATAATCATCATCATTCTTTTGATAATGAAGATGATGACCCAGCTTCTGATATTGAAACATGA 2940 44.35 MPPNDDIVFISRSTLRIPHFPPSRSHSSFKFCFKSLASQFDQSCKSISHFIDSVKRGSKLSHFNHSFPHLWPPTLPFCSSKKVTQQENSTSRRASWNWGSVFVEKYPLICSASMSLIQLDMSSKSESEDSGRRRGMEDMSTGLVGKSSLLCSASLALTRSDESSQSGGSESKELPQKGYSAARVDEERVLISEVLVRNKDGEELERKDLELEVFTALKASRPNSALTVREVQEDVHRIINSGYFYSCIPVAVDTRDGIRLIFQVEPNQEFQGLVCEGANVLPAKFLEEAFRDGYGKVVNLRHLDEVISSINGWYGERGLFGRVSAVDILSGGILSLQVSEAEVNNISIRFLDKKTGEPIPGNTRPETILRQLTTKKGQVYSMLQGKRDAETVLTMGIMEDVSIIPQPAADAGKVDILMNVVERPGGGFSAGGGLSCGSTGGAGLLSTLIGSLAYSHRNLFGRNQKLHVSLEKGQVDSTFRINYTDPWIEGDDKRTSRTMMVQNSRTPGTLVHGGSNLTIVRVTAGLEFNRPIRPTWSGTAGLYFQRAGAQDEKGEPILKDNIKCPLTASGNAVDNMLLAKLEGVYTGSGDHGSSMFVLSMEQGLPFLPEWLCFNRVNARARTGMELGFSQLLLSLSGGHVVGNFCPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGCGELSFPLFGPVEGVFFADYGTDLGSGASVLGDPAGARMKTGSGFGYGFGIRLESPLGPLRLEYAFNDKNGVKGLPTPSSSSTNSDLILRLSSTEISDQEDHTHQLQLSSNNSITSNSNGVNKGQYWIPTPTQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAIGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVKGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGLGHAAYGIDDHHNHHHSFDNEDDDPASDIET* 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 942824 958303 - Chy5G091680.1 Chy05g00122 226349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00122 979 Gene3D membrane protein fhac 344 424 - -
Chy05g00122 979 Gene3D membrane protein fhac 185 263 - -
Chy05g00122 979 ProSitePatterns Zinc finger C2H2 type domain signature. 818 838 IPR013087 -
Chy05g00122 979 SUPERFAMILY beta-beta-alpha zinc fingers 881 920 IPR036236 -
Chy05g00122 979 PANTHER OUTER ENVELOPE PROTEIN 80, CHLOROPLASTIC 128 745 - -
Chy05g00122 979 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 426 749 - -
Chy05g00122 979 Pfam Omp85 superfamily domain 458 745 IPR000184 GO:0019867
Chy05g00122 979 ProSiteProfiles Zinc finger C2H2 type domain profile. 900 927 IPR013087 -
Chy05g00122 979 MobiDBLite consensus disorder prediction 159 180 - -
Chy05g00122 979 Gene3D membrane protein fhac 264 343 - -
Chy05g00122 979 ProSiteProfiles Zinc finger C2H2 type domain profile. 816 843 IPR013087 -
Chy05g00122 979 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 128 745 IPR039910 -
Chy05g00122 979 MobiDBLite consensus disorder prediction 159 173 - -
Chy05g00122 979 SMART c2h2final6 900 920 IPR013087 -
Chy05g00122 979 SMART c2h2final6 863 895 IPR013087 -
Chy05g00122 979 SMART c2h2final6 816 838 IPR013087 -
Chy05g00122 979 Gene3D Classic Zinc Finger 877 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00122 Chy-Chr5:942824 Chy12g00769 Chy-Chr12:11794489 7.42E-20 dispersed
Chy08g00030 Chy-Chr8:1064979 Chy05g00122 Chy-Chr5:942824 1.21E-110 transposed
Chy09g00609 Chy-Chr9:7432797 Chy05g00122 Chy-Chr5:942824 6.01E-95 transposed
Chy12g00224 Chy-Chr12:2605845 Chy05g00122 Chy-Chr5:942824 1.56E-24 transposed
Chy12g00708 Chy-Chr12:10521894 Chy05g00122 Chy-Chr5:942824 1.73E-94 transposed
Chy01g01870 Chy-Chr1:24122003 Chy05g00122 Chy-Chr5:942824 1.23E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17963 PF01103 Omp85 4.50E-38 CL0193 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00122 K07277 - csv:101205737 1404.42