Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00137 ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTTTTCGGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCTCTGCCAGCAGCCGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGAAGATGATGATGAGACCACTAAAGATTCACATGCAAGTTTTGGGCAATTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCGGGAGTGATAGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCGTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACAATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGCTCTGACGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAATCAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATATGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTACGGTTTACGATCTGGTGAGAGAGGTGATGATGGAGACTGCTCAGGACAGCAGCGAAGTATCTCAGAAAATCAAGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1026 45.13 MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISLPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEEDDDETTKDSHASFGQLQHNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVIAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEARSYMNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1065847 1068718 + Chy5G091830.1 Chy05g00137 226364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00137 341 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Chy05g00137 341 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Chy05g00137 341 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 328 - -
Chy05g00137 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Chy05g00137 341 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Chy05g00137 341 MobiDBLite consensus disorder prediction 205 260 - -
Chy05g00137 341 MobiDBLite consensus disorder prediction 224 256 - -
Chy05g00137 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 328 IPR001289 GO:0003700|GO:0006355
Chy05g00137 341 MobiDBLite consensus disorder prediction 307 341 - -
Chy05g00137 341 MobiDBLite consensus disorder prediction 41 68 - -
Chy05g00137 341 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Chy05g00137 341 MobiDBLite consensus disorder prediction 1 24 - -
Chy05g00137 341 MobiDBLite consensus disorder prediction 205 220 - -
Chy05g00137 341 Gene3D - 166 228 - -
Chy05g00137 341 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Chy05g00137 341 MobiDBLite consensus disorder prediction 40 85 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01451 Chy05g00137 CCT
Chy02g01451 Chy05g00137 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00093 Chy-Chr2:587296 Chy05g00137 Chy-Chr5:1065847 1.20E-39 dispersed
Chy02g01451 Chy-Chr2:11583601 Chy05g00137 Chy-Chr5:1065847 2.78E-93 dispersed
Chy04g00761 Chy-Chr4:9685658 Chy05g00137 Chy-Chr5:1065847 1.79E-12 dispersed
Chy04g01847 Chy-Chr4:24668923 Chy05g00137 Chy-Chr5:1065847 9.47E-32 dispersed
Chy08g00434 Chy-Chr8:10510608 Chy05g00137 Chy-Chr5:1065847 4.68E-37 transposed
Chy01g01861 Chy-Chr1:24038802 Chy05g00137 Chy-Chr5:1065847 2.04E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17966 PF02045 CBFB_NFYA 1.90E-26 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00137 K08064 - csv:101212961 649.047