Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00162 ATGTGGTCCGCTGCTGCTCAGCGTTCTCTCAATTACGGCTTTGGATCCGAGATGGGAATGGTTGGTCTTCGTGATGTCTACGTCGTTGCTCCGGCTTCTTCTTTCAACCAAAATCCTCAACAACATGATGTTAATCTCCTCTCCGATCCTCATTCTCTCGCTGTTTCCAATCCTGCCACTGCTCTCGGCGTTGGTGTAGGCGTTGGGGTTATTCCGCTACTTACCGCCGGTCCTTGCCTTGGAGTTGAGGAGGAGAATCTTTTTGGTAATCGGAGTAGTAACAGAGGTGGAGGGATTCAGTTTCAACAATCAACGCAACATTATTTAAAGAAAACGCCGTCGGGTTCTCTCGATCATGTTTCCGGTACTAATAACGAGTTAATCGGTGGTGGAATCGGCGGTTCTGGTGGTTTGGTTTCGTCTTCGTCGGCGACGACGACATGTCAGGACTGTGGTAACCAAGCGAAGAAAGATTGTAGTCACAGACGGTGTAGAACTTGCTGTAGAAGTCGAGGGTTCGATTGTGCTACTCACGTGAAGAGCACATGGGTTCCTGCTGCTCGACGGAGAGAACGGCAACTTATGGCGGTTACTGCTACGGCCGCCGCCGATGGCTCCTCCGCTTCCACCTCCGGCGCGAAGAAACCCCGGCTAATTCCCTCGCAAACCACTTCTCATACCTCCACTTCCAACACCACTCCCCCGAGAAGCCTCGATACGAGCTCCAGTCATCAAGATGCCGGGAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCTGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGCGACGGTGGCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCATCTTCTTCTCCGCTTGTTGATCCATCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGTAATCAAATTAGTTGA 1101 51.41 MWSAAAQRSLNYGFGSEMGMVGLRDVYVVAPASSFNQNPQQHDVNLLSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCLGVEEENLFGNRSSNRGGGIQFQQSTQHYLKKTPSGSLDHVSGTNNELIGGGIGGSGGLVSSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLDTSSSHQDAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGNQIS* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1286980 1288275 + Chy5G092080.1 Chy05g00162 226389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00162 366 MobiDBLite consensus disorder prediction 198 253 - -
Chy05g00162 366 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 365 IPR007818 GO:0003700|GO:0006355
Chy05g00162 366 MobiDBLite consensus disorder prediction 311 342 - -
Chy05g00162 366 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 18 365 - -
Chy05g00162 366 MobiDBLite consensus disorder prediction 323 342 - -
Chy05g00162 366 Pfam Domain of unknown function (DUF702) 145 301 - -
Chy05g00162 366 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 253 300 IPR006511 -
Chy05g00162 366 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 147 189 IPR006510 -
Chy05g00162 366 MobiDBLite consensus disorder prediction 200 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01520 Chy05g00162 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00162 Chy-Chr5:1286980 Chy07g01266 Chy-Chr7:17371774 3.66E-43 dispersed
Chy10g01367 Chy-Chr10:17909169 Chy05g00162 Chy-Chr5:1286980 5.35E-54 transposed
Chy02g01520 Chy-Chr2:13004330 Chy05g00162 Chy-Chr5:1286980 5.73E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17969 PF05142 DUF702 8.20E-62 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00162 - - csv:101207487 629.017