Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00175 ATGCACAATGGCATTCGGTTATCAACATCCATCCCAACCCCTAGTCACCTTCTCTTTCGAATCCTTCATTCTTACTCTGGTTCCGCTCACATCGACACTGTCCGTCCACCATCATCTCCACCATTCAAATGCTCAATCTCTCCCCTTACAATCTCTGCGACTCTCCAAAACCTTCTGCAGCCGATCTCTGCGCCGGGCCCACCTCCGATTCTATCTTATGCCCCCGTTTTCCAGTTCCTTACTGGCCTAAACATGTTGAAATTGGGCCATCAAGTTCACGCCCATATGCTTCTCCGCGGCCTTCAGCCCACTGCGCTGGTTGGCTCCAAGATGGTTGCGTTTTATGCCAGTTCGGGTGATATTGATTCCTCTGTTTCGGTCTTCAATGGGATTGGTGAGCCTTCCTCTCTCTTGTTTAATTCCATGATTCGAGCTTATGCTCGATATGGGTTTGCAGAGAGAACTGTTGCCACTTATTTTTCTATGCATTCTTGGGGCTTCACAGGGGATTACTTTACTTTCCCTTTTGTTCTTAAGTCTTCTGTGGAGTTGTTGAGTGTTTGGATGGGGAAATGTGTTCATGGACTGATTTTGAGAATTGGGTTGCAGTTTGATTTGTATGTGGCTACTTCTTTGATTATTCTGTATGGGAAATGTGGTGAAATAAACGATGCGGGTAAGGTGTTTGATAATATGACTATTAGAGATGTTTCATCTTGGAATGCTTTACTTGCTGGTTACATGAAGAGTGGGTGTATTGATGCTGCAGTGGCGATTTTCGAGAGAATGCCATGGAGGAATATTGTCTCTTGGACGACTATGATTTCTGGATACGCACAGAGCGGCTTGGCACAGCAGGCATTGAGTTTGTTTGATGAAATGATGAAAGAAGATTCAGGAGTAAGACCGAACTGGGTGACTATAATGAGCGTCCTCCCAGCTTGTGCACAATTATCGACACTTGAACGCGGAAGGCAGATTCATGAGTTGGCTTGTCGGATGGGTTTGAATTCAAATGCTTCTGTGCTGATTGCGCTTACTGCAATGTATGCAAAATGTGGAAGCTTAGTCGATGCTCGCAACTGTTTCGACAAGCTTAATAGAAGTGAAAAGAATTTGATTGCTTGGAATACCATGATAACTGCTTATGCATCCTATGGACATGGGCTTCAAGCAGTGTCAACCTTTCGGGAGATGATCCAAGCAGGCATTCAGCCGGACAACATTACATTCACAGGATTGTTATCCGGTTGCAGCCATTCAGGTCTTGTTGATGTTGGTTTAAAGTACTTCAACCACATGAGCACCACATATTTGATCAATCCCAGAGTTGAGCATTATGCCTGTGTTGCCGATCTCTTAGGTCGAGCAGGGAGATTAGCTGAAGCAAGTAAACTTGTAGGCGAAATGCCAATGCCTGCAGGACCAAGTATTTGGGGTTCACTATTAGCTGCCTGTCGAAAACACCGTAATCTGGAAATGGCAGAAACTGCAGCAAGAAATCTTTTTGTCCTAGAACCAGAAAACACCGGCAACTACGTTCTACTTTCGAACATGTATGCTGAAGCCGGAAGGTGGCAGGAAGTTGACAAACTGAGAGCAATTGTGAAATCCCAGGGGACAAAGAAAAGTCCAGGTTGCAGTTGGATCGAGATAAATGGCAAAGCACATATGTTTCTCGGTGGCGATACATCTCACCCTCAAGGCAAGGAAATCTACATGTTCTTGGAGGCATTGCCAGAGAAGATGAAGGCAGCTGGCTATGTTCCTGATACAAGCTATGTACTGCATGACATCAGCGAGGAAGAGAAAGAATTCAACCTCATTGCACACAGTGAGAAGCTCGCCGTTGCATTCGGGATTCTTAACACTCCTGCTGAAACTGTTCTCCGGGTGACAAAGAACTTGAGAATTTGTGGGGACTGCCACACTGCAATGGTGTTCATTTCAGAGATATATGGGCGGGAAGTCATTGTTAGAGATATCAATCGGTTTCATCACTTTAAAGGGGGTTCTTGCTCTTGTGGAGATTACTGGTGA 2040 45.15 MHNGIRLSTSIPTPSHLLFRILHSYSGSAHIDTVRPPSSPPFKCSISPLTISATLQNLLQPISAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYMKSGCIDAAVAIFERMPWRNIVSWTTMISGYAQSGLAQQALSLFDEMMKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRSEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDNITFTGLLSGCSHSGLVDVGLKYFNHMSTTYLINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARNLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYVPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGSCSCGDYW* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1378489 1380528 - Chy5G092210.1 Chy05g00175 226402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00175 679 Pfam PPR repeat 139 167 IPR002885 -
Chy05g00175 679 Pfam PPR repeat 210 233 IPR002885 -
Chy05g00175 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Chy05g00175 679 Pfam PPR repeat family 266 316 IPR002885 -
Chy05g00175 679 Pfam PPR repeat family 371 419 IPR002885 -
Chy05g00175 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Chy05g00175 679 Pfam DYW family of nucleic acid deaminases 587 679 IPR032867 GO:0008270
Chy05g00175 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 266 IPR002885 -
Chy05g00175 679 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 665 - -
Chy05g00175 679 SUPERFAMILY TPR-like 266 528 IPR011990 GO:0005515
Chy05g00175 679 Gene3D Tetratricopeptide repeat domain 208 343 IPR011990 GO:0005515
Chy05g00175 679 Pfam E motif 489 551 IPR046848 -
Chy05g00175 679 TIGRFAM PPR: pentatricopeptide repeat domain 239 263 IPR002885 -
Chy05g00175 679 TIGRFAM PPR: pentatricopeptide repeat domain 375 407 IPR002885 -
Chy05g00175 679 TIGRFAM PPR: pentatricopeptide repeat domain 269 298 IPR002885 -
Chy05g00175 679 Gene3D Tetratricopeptide repeat domain 344 565 IPR011990 GO:0005515
Chy05g00175 679 Gene3D Tetratricopeptide repeat domain 64 193 IPR011990 GO:0005515
Chy05g00175 679 PANTHER - 69 665 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00175 - - - csv:101206760 1352.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00875 Chy-Chr2:5635745 Chy05g00175 Chy-Chr5:1378489 0 dispersed
Chy05g00175 Chy-Chr5:1378489 Chy12g00070 Chy-Chr12:630404 1.80E-37 dispersed
Chy05g00175 Chy-Chr5:1378489 Chy07g01258 Chy-Chr7:17283472 4.94E-169 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013762 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 0 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00175 Chy_Chr05 FPKM 10.188029 11.7761 7.153508 6.117154 52.464767 51.956642 54.262589 1.08013 0.490862 0.861937