Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00185 ATGGAACTCAGAAAGTACAAACCTGCCTTCCTCCTCCTCCTCCTCCTCTTCCTCTCCATCTCCGGCCGATCCGCCGTCCACGCCTACAAAAACCACACCGTCGGCGATTCCCTTGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTATCAGGAATGGACCTCCGGTAAAACCTTCGGTCTCGGCGATTTTCTAATTTTCAACACGGACAACAACCACTCGGTTGTGCAAACATACAATGTCACCACATACAAGCTTTGTGACTACAACGACGCATCAGATCACGATACGACGGAATGGTCCGCCGCTGATCCGTCCGCAACCACTCCCTACCCCGTCACGGTGGCTGTCCCCTTGGTTAAAGAAGGCCCCAACTACTTCTTCTCTGGCAACTACGACGGAGAGCAGTGCCAAAATGGGCAACAGTTCAACATAAATGTCACCCATGGACAGGGCCTCCCTAAAAGCTTGAGAGATCCTTCGGAGGAAGCTCCGGCTCCGGTAGTTCCTGACACCGGCGATCAAACCGAATCTGCACCAGACACCATTGTCCCTTCCAGCTTCGACAATCCTCGAAACGATGTCGCTGATAATAATAACGATAAGGAATCTTCGGGCTCGAATTCGTTATCGCTTGTTTATTGCTTCAAGTTTAATGAGTTTTTGTTCTTGTTAGTTGGTATTGCCTCTGCCTGCTTTTTGTCTTTGTACTGA 717 50.07 MELRKYKPAFLLLLLLFLSISGRSAVHAYKNHTVGDSLGWFDKLEKPAVDYQEWTSGKTFGLGDFLIFNTDNNHSVVQTYNVTTYKLCDYNDASDHDTTEWSAADPSATTPYPVTVAVPLVKEGPNYFFSGNYDGEQCQNGQQFNINVTHGQGLPKSLRDPSEEAPAPVVPDTGDQTESAPDTIVPSSFDNPRNDVADNNNDKESSGSNSLSLVYCFKFNEFLFLLVGIASACFLSLY* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1480177 1484357 - Chy5G092310.1 Chy05g00185 226412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00185 238 CDD Phytocyanin 30 148 - -
Chy05g00185 238 Gene3D - 28 151 IPR008972 -
Chy05g00185 238 MobiDBLite consensus disorder prediction 176 208 - -
Chy05g00185 238 ProSiteProfiles Phytocyanin domain profile. 30 150 IPR003245 GO:0009055
Chy05g00185 238 SUPERFAMILY Cupredoxins 30 148 IPR008972 -
Chy05g00185 238 MobiDBLite consensus disorder prediction 149 208 - -
Chy05g00185 238 PANTHER BNAA08G26900D PROTEIN 10 174 - -
Chy05g00185 238 PANTHER BLUE COPPER PROTEIN 10 174 IPR039391 GO:0009055
Chy05g00185 238 Pfam Plastocyanin-like domain 40 142 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00185 - - - csv:101203070 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00185 Chy-Chr5:1480177 Chy03g01346 Chy-Chr3:16409782 3.65E-13 dispersed
Chy05g00185 Chy-Chr5:1480177 Chy11g01992 Chy-Chr11:25820530 1.19E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01583 . 13 180 Phytocyanin Superfamily AT5G15350 53.3 6.3e-49 190.7
Chy03g01081 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 5.0e-41 164.5
Chy03g01081 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 5.0e-41 164.5
Chy04g01583 . 13 180 Phytocyanin Superfamily AT5G15350 53.3 6.3e-49 190.7
Chy05g00185 . 11 219 Phytocyanin Superfamily AT1G08500 56.1 5.6e-61 231.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00185 Chy_Chr05 FPKM 19.290581 17.409315 9.915565 11.161874 3.743133 3.636856 4.105211 2.570527 2.68402 2.580834