Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00189 ATGAAACTTCGCATGGATGCACTCGCCATTACAACATTGGCAACTTTCCTAGCAACTTTTACTGCCATCTTGGCCGTACCATCGCCGATGGTCCCGGTCGATAAGGCACAATTAGAAGCGTGGTTTTCAGAAAATGTGAAACCGTTTGCCGATCGTAATAAGGCAGAGCTTGATCCAGCGGTGGTGGCTGCAGAAGGAAACGTGACCATAGTTAAGGTAATGGGTGATGGAACGGGAGATTTCAAGACAGTCACTGAAGCTATTGCGAGCGTGCCAGTGAACAACAAGAATCGTGTAGTGATTTGGATTGGAGAAGGCGTTTATAAGGAGAAGCTTACGATTGAGAAAAATAAGCCTTTTATTACTCTTTGTGGCACTCCTAAAAATGTACCTACTTTGACATTTGATGGCGTTGCTTCCAAATATGGCACCGTTTATAGCGCTACCTTGATTGTTGAGGCTGATTATTTCGTTGCGGCTAATTTGATCATTGAGAATACATCACCAAGGCCAAATGGGAGAAAAGGAGCACAAGCATTAGCAGCAAGATTTAGGGGAACTAAATCCGCATTTTACAATTGCAAATTCCTTGGATTTCAAGATACCCTTTGTGACGATGACGGTTTACATTTCTACAAAGATTGCTTCATTCAAGGCACTGTTGATTTCATTTTTGGAAAAGGAACTTCTCTTTATTTGAACACAGAATTGAATGTGGTGGGAGAGGGACAATTCGCAGTGATAACAGCTCATTCAAGAGAACAAGAATCTGATGCCAGTGGATATTCATTTGTTCATTGTAGCATTACTGGAAACGGTAAAGACACATATTTGGGAAGAGCTTGGATGCCAAGATCTAGAGTTGTCTTTGCCTACACTTCAATGATTGATATCATTCATCCCGAAGGCTGGAATGACATGAAGCATGCCGGTTTCGACAAGACAGTTATGTTTGGAGAATACAAGTGTTCGGGGCCAGGATCGGTGTCGACTGGACGTGTAGCCTACGGGAAGCAACTGACTGAAGCAGAAGTGAAGCCATATCTTAGTCTCGAATACGTGCAAAGTGCAAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAG 1107 43.27 MKLRMDALAITTLATFLATFTAILAVPSPMVPVDKAQLEAWFSENVKPFADRNKAELDPAVVAAEGNVTIVKVMGDGTGDFKTVTEAIASVPVNNKNRVVIWIGEGVYKEKLTIEKNKPFITLCGTPKNVPTLTFDGVASKYGTVYSATLIVEADYFVAANLIIENTSPRPNGRKGAQALAARFRGTKSAFYNCKFLGFQDTLCDDDGLHFYKDCFIQGTVDFIFGKGTSLYLNTELNVVGEGQFAVITAHSREQESDASGYSFVHCSITGNGKDTYLGRAWMPRSRVVFAYTSMIDIIHPEGWNDMKHAGFDKTVMFGEYKCSGPGSVSTGRVAYGKQLTEAEVKPYLSLEYVQSAKWLLPPPNPQA* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1503554 1504959 + Chy5G092350.1 Chy05g00189 226416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00189 368 Gene3D - 67 363 IPR012334 -
Chy05g00189 368 SUPERFAMILY Pectin lyase-like 71 361 IPR011050 -
Chy05g00189 368 Pfam Pectinesterase 72 355 IPR000070 GO:0030599|GO:0042545
Chy05g00189 368 PANTHER PECTINESTERASE 63-RELATED 35 361 - -
Chy05g00189 368 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Chy05g00189 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01301 Chy-Chr2:9587908 Chy05g00189 Chy-Chr5:1503554 3.10E-131 dispersed
Chy05g00189 Chy-Chr5:1503554 Chy07g01088 Chy-Chr7:15822713 3.45E-79 dispersed
Chy05g00188 Chy-Chr5:1495610 Chy05g00189 Chy-Chr5:1503554 4.16E-169 tandem
Chy05g00189 Chy-Chr5:1503554 Chy05g00190 Chy-Chr5:1506943 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00189 K01051 - csv:101205575 719.539