Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00190 ATGCAACTTCGGATAAATGCACTCGCTATTACAAGATTGGTAACTTTCCTAGCAACTTTTACTGCCATCTTGGCCGTATCGCCGCCGATCCCAGTGGAGAAGTCGCAAATAGCCGGGTGGTTTGCAGAAAATGTGAAGCCGTTTGCCGTTCGTAATAAGGCAGAGCTTGATCCCGCGCTGGCGACTGCAGAAGAAAACGCAACCGTAATTAAGGTAATGGGCGATGGAACGGGAAATTTCAAGACAGTCACTGAAGCTATTGCGAGCGTGCCAGCGGACAACAAGAAACGTGTAGTGATTTGGATTGGAGGAGGCGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGGCTTTTGTTACTCTTTATGGCTCTGATCCTAAGAATATGCCTAAGTTAACTTTTGATGGCGATGCTGCTAAATACGGTACCGTTTATAGTGCTACATTGATTGTTGAGGCGGATTACTTCACTGCGGCTAATCTGATCATTGAGAACTCATCACCAAGGCCAGATGGGGTAAGAAAAGGAGCACAAGCATTAGCGGCAAGATTTATGGGCACTAAAGCCGCAATTTACAATTGCAAATTCCTTGGATTTCAAGATACCCTTTGTGACGATGACGGTTTACATTTCTACAAAGATTGCTTCATTCAAGGCACTGTTGATTTCATTTTCGGAAAAGGAACTTCCCTTTATTTGAACACCCAATTGGATGTGGCTGGAGATGGAGGATTAGCAGTGATAACAGCCCATTCAAGAGAACAAGAAGCTGACACCAGTGGTTATTCGTTTGTTCATTGTAGCATTACTGGAACTGGCGGTAAAAACACTTACTTGGGAAGAGCTTGGATGCCAAGATCTAGAGTTGTCTTTGCCTACACTACAATAGCTGATATCATTCATCCCGAAGGTTGGAATGACATGAATCATGCTGGTTTCGACAAGACGGTTATGTTCGGAGAATACAAGTGTTCAGGGCCAGGAGCGGTCTCGACGGGACGTGTAGCCTACGGCAAGCAATTGACTGATGTAGAAGCGAAGCCATTTCTTGGTCTGGAATACGTGCAAAGTGAGAAGTGGTTGCTTCCTCCTCCCAGTCCTCAAGTTTAG 1113 44.56 MQLRINALAITRLVTFLATFTAILAVSPPIPVEKSQIAGWFAENVKPFAVRNKAELDPALATAEENATVIKVMGDGTGNFKTVTEAIASVPADNKKRVVIWIGGGVYKEKLKIDRNKAFVTLYGSDPKNMPKLTFDGDAAKYGTVYSATLIVEADYFTAANLIIENSSPRPDGVRKGAQALAARFMGTKAAIYNCKFLGFQDTLCDDDGLHFYKDCFIQGTVDFIFGKGTSLYLNTQLDVAGDGGLAVITAHSREQEADTSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTIADIIHPEGWNDMNHAGFDKTVMFGEYKCSGPGAVSTGRVAYGKQLTDVEAKPFLGLEYVQSEKWLLPPPSPQV* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1506943 1513938 + Chy5G092360.1 Chy05g00190 226417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00190 370 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Chy05g00190 370 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 363 - -
Chy05g00190 370 Gene3D - 64 365 IPR012334 -
Chy05g00190 370 SUPERFAMILY Pectin lyase-like 67 363 IPR011050 -
Chy05g00190 370 Pfam Pectinesterase 71 357 IPR000070 GO:0030599|GO:0042545
Chy05g00190 370 PANTHER PECTINESTERASE 63-RELATED 34 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00188 Chy-Chr5:1495610 Chy05g00190 Chy-Chr5:1506943 0 dispersed
Chy05g00190 Chy-Chr5:1506943 Chy07g01088 Chy-Chr7:15822713 9.70E-79 dispersed
Chy05g00189 Chy-Chr5:1503554 Chy05g00190 Chy-Chr5:1506943 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00190 K01051 - csv:101205095 734.561