Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00192 ATGGCGGCTCGAGCTGTTGTTCCTCAAAGACAACTACGAATCAGAGATGAAGGTAAGCCGAAAGTCGTAGCAGCTGAAGGAAGAACAAGAAGAATTCTCAAAGACATAGGCAATCTCGTGCCTGATCAAGCCGTAGAAGGGAAACACGGACCCCAACCACCAGAGAAGAATAAAAGAGCAATCACCAAAAAAATAGATGGAGGAGTTGGGAAGGGAGTTAATGTAACGAAGGCCGCAATTACTGAGAAACAGAAACCGAAACCGAAGACTCTACTCAGCGTGGCCGATGAGGGACATATAATCAACATCAAAGATACTAAATCAAAGGACAAGAATAAGAGATCTCTGACTTCAACACTTAGTGCTAGAAGCAAGGCTGCTTGTGGAATCACCAATAACCCACTGGACTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAATTGGCCGTAGTTGAATACATCGATGACATGTACAAGTTTTACAAGCTTGCAGAAGGTGAGAGCAGAGTATCAGATTACATGGGAACACAACCAGATTTGAATGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTCCATCGAAAGTTTGAATTGATGCCAGAAACCCTTTATCTCGCTGTAAACATCGTCGATCGATTTCTTTCCTTAAAGACTGTACCAAGGAAGGAACTTCAATTGGTAGGCATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTCTGGTGATGGAGAAAGTAATCTTGGGTAGGCTGGAATGGCTTCTAACAGTTCCTACACCTTATGTTTTTCTTGTTCGATATGTCAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTGGCTGAGCTTGGTTTGATGAACTATCAAATATCTATATCATATAGCCCTTCAACGATTGCTTCAGCCGCTGTTTATGTTGCACGATGCACACTTGAAAAGAACCCTATTTGGACAGCCACTCTGCATCACCATACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCAGAACTCCTTGTGAACCTGCACCGTGGAGTTGTAGATTCCAAGCTCAAGGCTGTGTATAGAAAGTACACAAGTCCAGATCGACGTGCTGTTTCTCTTCTTCCCCCAGCCAAAAGTTTAACTCCAGATTGCAGTCCAGAATTATGA 1251 42.13 MAARAVVPQRQLRIRDEGKPKVVAAEGRTRRILKDIGNLVPDQAVEGKHGPQPPEKNKRAITKKIDGGVGKGVNVTKAAITEKQKPKPKTLLSVADEGHIINIKDTKSKDKNKRSLTSTLSARSKAACGITNNPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEGESRVSDYMGTQPDLNAKMRSILIDWLIEVHRKFELMPETLYLAVNIVDRFLSLKTVPRKELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYQISISYSPSTIASAAVYVARCTLEKNPIWTATLHHHTGYVEEELKECAELLVNLHRGVVDSKLKAVYRKYTSPDRRAVSLLPPAKSLTPDCSPEL* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1517240 1519303 - Chy5G092380.1 Chy05g00192 226419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00192 416 Gene3D - 173 284 - -
Chy05g00192 416 CDD CYCLIN 284 373 IPR013763 -
Chy05g00192 416 Gene3D - 159 401 - -
Chy05g00192 416 PIRSF Cyclin_A_B_D_E 2 415 IPR039361 -
Chy05g00192 416 PANTHER CYCLINS 23 407 IPR039361 -
Chy05g00192 416 SUPERFAMILY Cyclin-like 287 408 IPR036915 -
Chy05g00192 416 CDD CYCLIN 187 276 IPR013763 -
Chy05g00192 416 SMART Cyclin_C_2 286 405 IPR004367 -
Chy05g00192 416 PANTHER CYCLIN-B1-4 23 407 - -
Chy05g00192 416 Pfam Cyclin, N-terminal domain 159 283 IPR006671 -
Chy05g00192 416 SUPERFAMILY Cyclin-like 148 281 IPR036915 -
Chy05g00192 416 SMART cyclin_7 193 277 IPR013763 -
Chy05g00192 416 SMART cyclin_7 290 374 IPR013763 -
Chy05g00192 416 Pfam Cyclin, C-terminal domain 286 404 IPR004367 -
Chy05g00192 416 ProSitePatterns Cyclins signature. 188 219 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00850 Chy-Chr1:7454073 Chy05g00192 Chy-Chr5:1517240 1.50E-83 dispersed
Chy02g00511 Chy-Chr2:3107784 Chy05g00192 Chy-Chr5:1517240 1.36E-82 dispersed
Chy05g00192 Chy-Chr5:1517240 Chy08g00239 Chy-Chr8:5394553 8.97E-93 dispersed
Chy08g00238 Chy-Chr8:5394084 Chy05g00192 Chy-Chr5:1517240 3.87E-36 dispersed
Chy10g00215 Chy-Chr10:5472752 Chy05g00192 Chy-Chr5:1517240 2.58E-17 dispersed
Chy05g00192 Chy-Chr5:1517240 Chy07g00389 Chy-Chr7:3102293 7.46E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00192 K21777 - csv:101222873 803.897