Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy05g00194 | ATGGGGGATATTAGAAAATGGTTCATGAAAGCACACGACAAAGATAACGGCAGTGGGTCAAAGAAAGCAAAACCGGCTCCAAGCAGCTTAGAGAAATCCGCTTCAGCTGGAAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAATATTTTGCATCAGAAAAGCAGGAGGCCAAGGATACAGAAGAAACAGAGGTACCCCCGATCATACGGAAGTCCCCACAGGATACTAAGGAATCACCAGCCAAAAGAAAGTTTCAAAAGTATAATGAGGAATCACCGAAAGCTTCACCTTTAAAAAAATCAAACAAAGTCGATGACAATGATGATGTTGCTGTTCTTTCTAGTTCTAAAAAGAAAATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTTGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTAAAGCCCAGTGGAAGGGGTAGGGGTGGAAGAGGTTCGTCTGCTGCAACCATTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAGGGGGAAAAGGAAGTCCCTAAAGGTGCTCCGGACTGTTTAGCTGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTCTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTGTTTGACATGATCCGTGCATCTGGCAAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAATCTGAAGAATCTCCGACAAAGAAAAATTTCCAGAAAGTGCAAGCAAAATCCCACAAAGATTTGGCTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCAGAACTGCTGAATTCTCTAACCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAAAACTTCCTGGATGTTGGAAGCAAAAAGAAGGTTAAAAAGGCCAGTGATTCTGGTGCGAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTAGTTAGTCAGATGCTTGGTTTTGAGGCTATAGAGGTTAATGCCAGCGACAATAGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTTCATTTCAAAATGGATCAGCCAAAACATCACAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGGGTTGCTGATCTGATTGCGAGTATTAAGACGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAACTGAAAAGCCTCGTGAACTATTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTAGTTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTTTCTATGTCAGTTATTAAATATGATGATATTCGGCAACGGCTTCTGAGCAGTAAGAAAGATGAAGACATCTCACCATTCACTGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTGAGGATGGATGAAAGGATTGATCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTGCTGTTAGCAAGGATGACACTGGGATCAAACGGATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTTTCTCAAAGTAGTTGTGTTGCTTCTTGTATAATCCCAGCTTCGTTATTGCATGGGCAAAGAGAAACGCTTGAGCAGTATGAGCGTAATTTTAATAGATTTGGCGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTCTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAATCCTGTTCAGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTCTTTCTAAAGAGGTTGACTGAACCACTGCACATGCTGCCTAAGGATGAGGCTGTTAAAACAGTGGTTGAATTTATGAGTCTATACTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCACTAGATGGAGTTGCCCCTGCGGTCAAAGCTGCTCTAACCAAGGCATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTGCACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCAATTCTAGAACCGACTGAGGATACAGTTGAAGGTGCTGGGGGAGAGACATTGGTGGAAAGTGATGATGAAAACTCTGTGGACAATGAGGGCGAAGAAAATTCCACAAATGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAGATTCAAGCGCCAAGAAATCCGGGGGTAGAGAAAGAGGAGGTAGAACTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGATTCAACTTACAAATCCCCACCTCCACTACCCACAATGAATAAGGCTCGGATTAAGAAGATAATGCAGGCCGATGAAGATGTAGGGAAGATAGCTATGGCAGTCCCACTTTTAGTCTCAAAGGCACTGGAACTATTTTTACAAAATTTATGTAACAGAACGTATGAGATTACTCTGAAGAGGGGGGCTAGGACATTGAACTCTTTGCACTTAAAGCAATGTATTCAGACGTTTAATGTTTTTGATTTCTTGAGGGGTGTTGTGGGCAAGGTCCCTGATTTAGGTGGCTCTGATGCTGCGGAGGACCGGCAGATTTCCAAAAGAAGGAAAGTTGCAGATGAAGATGGTGGCAACGATAGTGATGAAGAATCCAAAAGGAGTAAGATGACAGAAGCTGGGCATTGCATCAGTGGCCGAGGAAGAGGTAGGGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGACACTTGGAGAAGGATACAGGCATACATTATGATAACTTCGAGGATGATATGGAAATCCCTGATCATCTCGATGATGACCTCCACAAAACTGAGCCTGACAATGGTGTCGCAGAAGCTCGAGTAGAGAACGATAATACTCTGGTTGACAAAGCTTTAGAACCATCGGTTCGAAACTTTGACTTGAACGTAAACTTGGACGAAGATGGTGATTCAACTTCAATTCCAGTGGCCGCTTCTACAGGTTCACCAGTAAAGCGCCCCACCGATTCAAAACATGATGAATACCCTGGTTGGTCAGTGGCTGAAATGGAAAAGATGGCTATTGATCCAATTCAACTAGCGAATATAAATGAGACTATAGACGATGAGGAAGATTATGACGAAGAGGGTCAATCTAATCAAAGATTTGATTCCTTTTTCAACAGTAATTTGCTGAAGAAGAGAAGCACAGCTCCAATGGAGGCAACACCAAACGAAAGCGAAGACAAGGGAATTGGATCCTCAATTTCATTATACTCCTTTCATTTATGGAACCAAATTGTATCATTTTTGCCATCTCGTCATGATTCCAATTTTCTTTGGAAGCTTTTGAGTCTCCTTCGTCGGAAGAGACGCAAGACTGGTCTTCCTCTTCCTCTACCTTTGAACTCGATAAACTCTTCTGTTGCCCACTGGGCCAAAATGGATGAAATGGTACCTTTGCACACAAAAAATTCAAAGATGAATCTCAATTCCACGATGCTATATAATTCTCAACACTTGATGAATTCCTATTTCAACAGTAATTTGCTGAAGAAGAGAAGCACAACTCCAATGGAGGCAGACAAGGGAATCGGATCCTCAATTTCATTATACTCCTTTCATTTATGGAACCAAATTGTATCATTTTTGCCATCTCGTTATGATTCCAATTTTCTTTGGAAGCTTTCGAGTCTCCTTCGTCGGAAGAGACGCAAGACTGGTCTTCCTCTTCCTCTACCTTTGAACTCGATAAACTCTTCTGTTTTAACAGTAACTGGCTGGGAACCAGCAGAGGCTTCTAGACTGTACGATGTTTTGGGAGATCTCTTGGAGCACTGTTTCTCAAATTTACATAGCATTTGGAAGAACCTGCAATTCTGGCAATCTCGTGCAGAGGGTACAAATGCTCAAAAAGTTTACTTTTTGATTTGTGAGAGAGGTCCAAGGGCGTTTTTCAGTGGAACAGTGCAGTTAATGCGCCAAAGTCTTAGGGATGGTTTTTCCTTGCAACATGTAGCTCGTGAGGCATCTCTTTACATAGCTCACCGGATAAGTATATTGAGCAACTTAAGATGTCATCTTGCAGTTTTTGTGGCTCAGGTCTTTATGGAAATTGACAAAATTGGGGCAGAGGCAGTGGATGGTCAAGAAAATTCCTTGCCTTCATTGTTGGTTACATTGAATGGCTTATTTCTCGATCTAGAGGCATCCATTTGTCAACTGCATGCAACACCTCATATGGATTTTATTGATGACAGCGTTTCATTTCCTCTATTTGAAAAAGTACCAGATGTGAACAAGGAGGGATCTCAGTGGACAAGTTGTGAAATTAGTGATGCTATCAACTTGCTTTATCAGAACCTTCATAAGTTGGACTCTTTCATCTCTAGTCTTGTTTGTAAACATCGAAAGCCAAGGAAACTAACTCAATACTGGCTTGGATATTCTTGTGGTGCAATTGGTCTTTCAATCTGTTCTGCTTGGCTTGTTCAACATAGTAGTTTAATGGGGAGCAATGATATTGAGAATTGGGTTCGCGAAGCACATAATTCAGCAGCTAGTTTTTTCAAGGATCATGTAGAACAACCGCTTATTTCAATTAGAGATGAACTTTTTGATACATTTAGAAAGAGGCATAAAGGTGTGATGGAGGTTCAAGAGGTTCAGTTAACTGCTATCTCGCTGCACAGAATGTTACTTGCTTTCAGTGAGCACACAAAAGGCCAGAAGTTTCCAGACGATGCATCGGATCAAGAAATGCTTGCAATAGTTATGACCAGGTATGAGAAAGAACTGATGCATCCCATTCAAAATCTTCTTAGCGGAGAGCTGGCCCGTGCTTTGCTTATCCAGGTGCAGAAGCTAAAATTAGATATTGAGACGGCAATGCTTGAGCTTGACCAGATTCTCAAGGCAAATGAAATCAACTTTGCTGTTCTAGCTGCATTGCCTGCATTCTTTCTCTCACTTCTTTTGCTGATGCTTTTGCGTACGTGGTATAAACAGGACACTAGAGCTGAAGGGAAGGGAAGAGCTGCTCGGCTTCAGAGAAGACTACTAGTTGTGGAGGTGGAGAAAGCAATAATGCAATACCAGAGTTTTGTTGACCAAGGACGTGTAAAAGATGCTGAATGTAGATTTGGGTTACTGTTGTATAGTTTGGGTAGGTTGTACCATGCTTCCGAGAAGCATGCCAAAGCAACTGGTGAATGGCTACATTTGAGGCAGGATATTTTGGACCTGGGAAAGACCAGTCTTCCAACAAGTGATAAGCTCAGAATTACCTGGCGCATGGAACGGGTATACGATTGTTTACTTCCTGCATTGAAACGTTCATAA | 5916 | 42.16 | MGDIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAGKTGPSGGESTGRRITSKYFASEKQEAKDTEETEVPPIIRKSPQDTKESPAKRKFQKYNEESPKASPLKKSNKVDDNDDVAVLSSSKKKMSEVTPNKKLKSGSGKGITQKPVEIEASDDEETKGTDSSLKPSGRGRGGRGSSAATIGGRGRGGGRGGFMNFGERKDPPHKGEKEVPKGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAPPRQDPKKSVVKSEESPTKKNFQKVQAKSHKDLAAGASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMDQPKHHKTVLIMDEVDGMSAGDRGGVADLIASIKTSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLVQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSKKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDTGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCVASCIIPASLLHGQRETLEQYERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHMLPKDEAVKTVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLIALPGMKKAPKKRIAAILEPTEDTVEGAGGETLVESDDENSVDNEGEENSTNGEKLQLELQSLNKKGMQVQLDLKGVEDSSAKKSGGRERGGRTSQASEKKGGRDSTYKSPPPLPTMNKARIKKIMQADEDVGKIAMAVPLLVSKALELFLQNLCNRTYEITLKRGARTLNSLHLKQCIQTFNVFDFLRGVVGKVPDLGGSDAAEDRQISKRRKVADEDGGNDSDEESKRSKMTEAGHCISGRGRGRGRGRGRGRSSRHLEKDTGIHYDNFEDDMEIPDHLDDDLHKTEPDNGVAEARVENDNTLVDKALEPSVRNFDLNVNLDEDGDSTSIPVAASTGSPVKRPTDSKHDEYPGWSVAEMEKMAIDPIQLANINETIDDEEDYDEEGQSNQRFDSFFNSNLLKKRSTAPMEATPNESEDKGIGSSISLYSFHLWNQIVSFLPSRHDSNFLWKLLSLLRRKRRKTGLPLPLPLNSINSSVAHWAKMDEMVPLHTKNSKMNLNSTMLYNSQHLMNSYFNSNLLKKRSTTPMEADKGIGSSISLYSFHLWNQIVSFLPSRYDSNFLWKLSSLLRRKRRKTGLPLPLPLNSINSSVLTVTGWEPAEASRLYDVLGDLLEHCFSNLHSIWKNLQFWQSRAEGTNAQKVYFLICERGPRAFFSGTVQLMRQSLRDGFSLQHVAREASLYIAHRISILSNLRCHLAVFVAQVFMEIDKIGAEAVDGQENSLPSLLVTLNGLFLDLEASICQLHATPHMDFIDDSVSFPLFEKVPDVNKEGSQWTSCEISDAINLLYQNLHKLDSFISSLVCKHRKPRKLTQYWLGYSCGAIGLSICSAWLVQHSSLMGSNDIENWVREAHNSAASFFKDHVEQPLISIRDELFDTFRKRHKGVMEVQEVQLTAISLHRMLLAFSEHTKGQKFPDDASDQEMLAIVMTRYEKELMHPIQNLLSGELARALLIQVQKLKLDIETAMLELDQILKANEINFAVLAALPAFFLSLLLLMLLRTWYKQDTRAEGKGRAARLQRRLLVVEVEKAIMQYQSFVDQGRVKDAECRFGLLLYSLGRLYHASEKHAKATGEWLHLRQDILDLGKTSLPTSDKLRITWRMERVYDCLLPALKRS* | 1972 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1540002 | 1584055 | - | Chy5G092400.1 | Chy05g00194 | 226421 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy05g00194 | 1971 | Gene3D | - | 350 | 538 | IPR027417 | - | |
Chy05g00194 | 1971 | SMART | BRCT_7 | 216 | 294 | IPR001357 | - | |
Chy05g00194 | 1971 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 350 | 599 | IPR027417 | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 931 | 960 | - | - | |
Chy05g00194 | 1971 | SUPERFAMILY | Histone-fold | 980 | 1049 | IPR009072 | GO:0046982 | |
Chy05g00194 | 1971 | SMART | AAA_5 | 402 | 540 | IPR003593 | - | |
Chy05g00194 | 1971 | Pfam | ATPase family associated with various cellular activities (AAA) | 406 | 518 | IPR003959 | GO:0005524|GO:0016887 | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 81 | 131 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1182 | 1197 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 32 | 54 | - | - | |
Chy05g00194 | 1971 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 610 | 755 | IPR008921 | GO:0003677|GO:0006260 | |
Chy05g00194 | 1971 | Gene3D | Histone, subunit A | 960 | 1048 | IPR009072 | GO:0046982 | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 148 | 163 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 55 | 74 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 296 | 325 | - | - | |
Chy05g00194 | 1971 | Pfam | Replication factor RFC1 C terminal domain | 679 | 841 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 872 | 907 | - | - | |
Chy05g00194 | 1971 | CDD | BRCT_RFC1 | 214 | 292 | - | - | |
Chy05g00194 | 1971 | CDD | HLD_clamp_RFC | 539 | 597 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1054 | 1090 | - | - | |
Chy05g00194 | 1971 | Gene3D | BRCT domain | 191 | 293 | IPR036420 | - | |
Chy05g00194 | 1971 | Coils | Coil | 1811 | 1831 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Chy05g00194 | 1971 | ProSiteProfiles | BRCT domain profile. | 214 | 292 | IPR001357 | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1051 | 1147 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 927 | 971 | - | - | |
Chy05g00194 | 1971 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 14 | 939 | - | - | |
Chy05g00194 | 1971 | CDD | AAA | 391 | 539 | - | - | |
Chy05g00194 | 1971 | SUPERFAMILY | BRCT domain | 216 | 293 | IPR036420 | - | |
Chy05g00194 | 1971 | Gene3D | - | 611 | 723 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1 | 216 | - | - | |
Chy05g00194 | 1971 | Pfam | BRCA1 C Terminus (BRCT) domain | 216 | 291 | IPR001357 | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1110 | 1147 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 294 | 344 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 1182 | 1204 | - | - | |
Chy05g00194 | 1971 | MobiDBLite | consensus disorder prediction | 198 | 213 | - | - | |
Chy05g00194 | 1971 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 14 | 939 | - | - | |
Chy05g00194 | 1971 | Pfam | ATP synthase regulation protein NCA2 | 1687 | 1961 | IPR013946 | - | |
Chy05g00194 | 1971 | Gene3D | - | 539 | 609 | - | - | |
Chy05g00194 | 1971 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 973 | 1033 | IPR003958 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy05g00194 | Chy-Chr5:1540002 | Chy10g00706 | Chy-Chr10:13408346 | 7.22E-57 | dispersed | |
Chy08g00054 | Chy-Chr8:1871086 | Chy05g00194 | Chy-Chr5:1540002 | 1.35E-06 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17970 | PF08637 | NCA2 | 8.20E-69 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy05g00194 | K10754 | - | csv:101204361 | 1786.16 |