Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00194 ATGGGGGATATTAGAAAATGGTTCATGAAAGCACACGACAAAGATAACGGCAGTGGGTCAAAGAAAGCAAAACCGGCTCCAAGCAGCTTAGAGAAATCCGCTTCAGCTGGAAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAATATTTTGCATCAGAAAAGCAGGAGGCCAAGGATACAGAAGAAACAGAGGTACCCCCGATCATACGGAAGTCCCCACAGGATACTAAGGAATCACCAGCCAAAAGAAAGTTTCAAAAGTATAATGAGGAATCACCGAAAGCTTCACCTTTAAAAAAATCAAACAAAGTCGATGACAATGATGATGTTGCTGTTCTTTCTAGTTCTAAAAAGAAAATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTTGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTAAAGCCCAGTGGAAGGGGTAGGGGTGGAAGAGGTTCGTCTGCTGCAACCATTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAGGGGGAAAAGGAAGTCCCTAAAGGTGCTCCGGACTGTTTAGCTGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTCTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTGTTTGACATGATCCGTGCATCTGGCAAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAATCTGAAGAATCTCCGACAAAGAAAAATTTCCAGAAAGTGCAAGCAAAATCCCACAAAGATTTGGCTGCTGGTGCTTCACCTGCTAAGCAAAAAAGCAGAACTGCTGAATTCTCTAACCTAACATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACGAAAACTTCCTGGATGTTGGAAGCAAAAAGAAGGTTAAAAAGGCCAGTGATTCTGGTGCGAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTAGTTAGTCAGATGCTTGGTTTTGAGGCTATAGAGGTTAATGCCAGCGACAATAGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTTCATTTCAAAATGGATCAGCCAAAACATCACAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGGGTTGCTGATCTGATTGCGAGTATTAAGACGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAACTGAAAAGCCTCGTGAACTATTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTAGTTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTTTCTATGTCAGTTATTAAATATGATGATATTCGGCAACGGCTTCTGAGCAGTAAGAAAGATGAAGACATCTCACCATTCACTGCTGTTGACAAGCTGTTTGGTTTTAATTCTGGGAAGTTGAGGATGGATGAAAGGATTGATCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGTGCTGTTAGCAAGGATGACACTGGGATCAAACGGATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTTTCTCAAAGTAGTTGTGTTGCTTCTTGTATAATCCCAGCTTCGTTATTGCATGGGCAAAGAGAAACGCTTGAGCAGTATGAGCGTAATTTTAATAGATTTGGCGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTCTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAATCCTGTTCAGGGAGGGAACACCTACGAGTTGAGAACCTTACTCTCTTTCTAAAGAGGTTGACTGAACCACTGCACATGCTGCCTAAGGATGAGGCTGTTAAAACAGTGGTTGAATTTATGAGTCTATACTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCACTAGATGGAGTTGCCCCTGCGGTCAAAGCTGCTCTAACCAAGGCATACAAAGAAGCAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTGCACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCAATTCTAGAACCGACTGAGGATACAGTTGAAGGTGCTGGGGGAGAGACATTGGTGGAAAGTGATGATGAAAACTCTGTGGACAATGAGGGCGAAGAAAATTCCACAAATGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAGATTCAAGCGCCAAGAAATCCGGGGGTAGAGAAAGAGGAGGTAGAACTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGATTCAACTTACAAATCCCCACCTCCACTACCCACAATGAATAAGGCTCGGATTAAGAAGATAATGCAGGCCGATGAAGATGTAGGGAAGATAGCTATGGCAGTCCCACTTTTAGTCTCAAAGGCACTGGAACTATTTTTACAAAATTTATGTAACAGAACGTATGAGATTACTCTGAAGAGGGGGGCTAGGACATTGAACTCTTTGCACTTAAAGCAATGTATTCAGACGTTTAATGTTTTTGATTTCTTGAGGGGTGTTGTGGGCAAGGTCCCTGATTTAGGTGGCTCTGATGCTGCGGAGGACCGGCAGATTTCCAAAAGAAGGAAAGTTGCAGATGAAGATGGTGGCAACGATAGTGATGAAGAATCCAAAAGGAGTAAGATGACAGAAGCTGGGCATTGCATCAGTGGCCGAGGAAGAGGTAGGGGCAGAGGTAGAGGTCGTGGGCGTAGTAGTAGACACTTGGAGAAGGATACAGGCATACATTATGATAACTTCGAGGATGATATGGAAATCCCTGATCATCTCGATGATGACCTCCACAAAACTGAGCCTGACAATGGTGTCGCAGAAGCTCGAGTAGAGAACGATAATACTCTGGTTGACAAAGCTTTAGAACCATCGGTTCGAAACTTTGACTTGAACGTAAACTTGGACGAAGATGGTGATTCAACTTCAATTCCAGTGGCCGCTTCTACAGGTTCACCAGTAAAGCGCCCCACCGATTCAAAACATGATGAATACCCTGGTTGGTCAGTGGCTGAAATGGAAAAGATGGCTATTGATCCAATTCAACTAGCGAATATAAATGAGACTATAGACGATGAGGAAGATTATGACGAAGAGGGTCAATCTAATCAAAGATTTGATTCCTTTTTCAACAGTAATTTGCTGAAGAAGAGAAGCACAGCTCCAATGGAGGCAACACCAAACGAAAGCGAAGACAAGGGAATTGGATCCTCAATTTCATTATACTCCTTTCATTTATGGAACCAAATTGTATCATTTTTGCCATCTCGTCATGATTCCAATTTTCTTTGGAAGCTTTTGAGTCTCCTTCGTCGGAAGAGACGCAAGACTGGTCTTCCTCTTCCTCTACCTTTGAACTCGATAAACTCTTCTGTTGCCCACTGGGCCAAAATGGATGAAATGGTACCTTTGCACACAAAAAATTCAAAGATGAATCTCAATTCCACGATGCTATATAATTCTCAACACTTGATGAATTCCTATTTCAACAGTAATTTGCTGAAGAAGAGAAGCACAACTCCAATGGAGGCAGACAAGGGAATCGGATCCTCAATTTCATTATACTCCTTTCATTTATGGAACCAAATTGTATCATTTTTGCCATCTCGTTATGATTCCAATTTTCTTTGGAAGCTTTCGAGTCTCCTTCGTCGGAAGAGACGCAAGACTGGTCTTCCTCTTCCTCTACCTTTGAACTCGATAAACTCTTCTGTTTTAACAGTAACTGGCTGGGAACCAGCAGAGGCTTCTAGACTGTACGATGTTTTGGGAGATCTCTTGGAGCACTGTTTCTCAAATTTACATAGCATTTGGAAGAACCTGCAATTCTGGCAATCTCGTGCAGAGGGTACAAATGCTCAAAAAGTTTACTTTTTGATTTGTGAGAGAGGTCCAAGGGCGTTTTTCAGTGGAACAGTGCAGTTAATGCGCCAAAGTCTTAGGGATGGTTTTTCCTTGCAACATGTAGCTCGTGAGGCATCTCTTTACATAGCTCACCGGATAAGTATATTGAGCAACTTAAGATGTCATCTTGCAGTTTTTGTGGCTCAGGTCTTTATGGAAATTGACAAAATTGGGGCAGAGGCAGTGGATGGTCAAGAAAATTCCTTGCCTTCATTGTTGGTTACATTGAATGGCTTATTTCTCGATCTAGAGGCATCCATTTGTCAACTGCATGCAACACCTCATATGGATTTTATTGATGACAGCGTTTCATTTCCTCTATTTGAAAAAGTACCAGATGTGAACAAGGAGGGATCTCAGTGGACAAGTTGTGAAATTAGTGATGCTATCAACTTGCTTTATCAGAACCTTCATAAGTTGGACTCTTTCATCTCTAGTCTTGTTTGTAAACATCGAAAGCCAAGGAAACTAACTCAATACTGGCTTGGATATTCTTGTGGTGCAATTGGTCTTTCAATCTGTTCTGCTTGGCTTGTTCAACATAGTAGTTTAATGGGGAGCAATGATATTGAGAATTGGGTTCGCGAAGCACATAATTCAGCAGCTAGTTTTTTCAAGGATCATGTAGAACAACCGCTTATTTCAATTAGAGATGAACTTTTTGATACATTTAGAAAGAGGCATAAAGGTGTGATGGAGGTTCAAGAGGTTCAGTTAACTGCTATCTCGCTGCACAGAATGTTACTTGCTTTCAGTGAGCACACAAAAGGCCAGAAGTTTCCAGACGATGCATCGGATCAAGAAATGCTTGCAATAGTTATGACCAGGTATGAGAAAGAACTGATGCATCCCATTCAAAATCTTCTTAGCGGAGAGCTGGCCCGTGCTTTGCTTATCCAGGTGCAGAAGCTAAAATTAGATATTGAGACGGCAATGCTTGAGCTTGACCAGATTCTCAAGGCAAATGAAATCAACTTTGCTGTTCTAGCTGCATTGCCTGCATTCTTTCTCTCACTTCTTTTGCTGATGCTTTTGCGTACGTGGTATAAACAGGACACTAGAGCTGAAGGGAAGGGAAGAGCTGCTCGGCTTCAGAGAAGACTACTAGTTGTGGAGGTGGAGAAAGCAATAATGCAATACCAGAGTTTTGTTGACCAAGGACGTGTAAAAGATGCTGAATGTAGATTTGGGTTACTGTTGTATAGTTTGGGTAGGTTGTACCATGCTTCCGAGAAGCATGCCAAAGCAACTGGTGAATGGCTACATTTGAGGCAGGATATTTTGGACCTGGGAAAGACCAGTCTTCCAACAAGTGATAAGCTCAGAATTACCTGGCGCATGGAACGGGTATACGATTGTTTACTTCCTGCATTGAAACGTTCATAA 5916 42.16 MGDIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAGKTGPSGGESTGRRITSKYFASEKQEAKDTEETEVPPIIRKSPQDTKESPAKRKFQKYNEESPKASPLKKSNKVDDNDDVAVLSSSKKKMSEVTPNKKLKSGSGKGITQKPVEIEASDDEETKGTDSSLKPSGRGRGGRGSSAATIGGRGRGGGRGGFMNFGERKDPPHKGEKEVPKGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAPPRQDPKKSVVKSEESPTKKNFQKVQAKSHKDLAAGASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKASDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFKMDQPKHHKTVLIMDEVDGMSAGDRGGVADLIASIKTSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLVQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSKKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDTGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSCVASCIIPASLLHGQRETLEQYERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHMLPKDEAVKTVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLIALPGMKKAPKKRIAAILEPTEDTVEGAGGETLVESDDENSVDNEGEENSTNGEKLQLELQSLNKKGMQVQLDLKGVEDSSAKKSGGRERGGRTSQASEKKGGRDSTYKSPPPLPTMNKARIKKIMQADEDVGKIAMAVPLLVSKALELFLQNLCNRTYEITLKRGARTLNSLHLKQCIQTFNVFDFLRGVVGKVPDLGGSDAAEDRQISKRRKVADEDGGNDSDEESKRSKMTEAGHCISGRGRGRGRGRGRGRSSRHLEKDTGIHYDNFEDDMEIPDHLDDDLHKTEPDNGVAEARVENDNTLVDKALEPSVRNFDLNVNLDEDGDSTSIPVAASTGSPVKRPTDSKHDEYPGWSVAEMEKMAIDPIQLANINETIDDEEDYDEEGQSNQRFDSFFNSNLLKKRSTAPMEATPNESEDKGIGSSISLYSFHLWNQIVSFLPSRHDSNFLWKLLSLLRRKRRKTGLPLPLPLNSINSSVAHWAKMDEMVPLHTKNSKMNLNSTMLYNSQHLMNSYFNSNLLKKRSTTPMEADKGIGSSISLYSFHLWNQIVSFLPSRYDSNFLWKLSSLLRRKRRKTGLPLPLPLNSINSSVLTVTGWEPAEASRLYDVLGDLLEHCFSNLHSIWKNLQFWQSRAEGTNAQKVYFLICERGPRAFFSGTVQLMRQSLRDGFSLQHVAREASLYIAHRISILSNLRCHLAVFVAQVFMEIDKIGAEAVDGQENSLPSLLVTLNGLFLDLEASICQLHATPHMDFIDDSVSFPLFEKVPDVNKEGSQWTSCEISDAINLLYQNLHKLDSFISSLVCKHRKPRKLTQYWLGYSCGAIGLSICSAWLVQHSSLMGSNDIENWVREAHNSAASFFKDHVEQPLISIRDELFDTFRKRHKGVMEVQEVQLTAISLHRMLLAFSEHTKGQKFPDDASDQEMLAIVMTRYEKELMHPIQNLLSGELARALLIQVQKLKLDIETAMLELDQILKANEINFAVLAALPAFFLSLLLLMLLRTWYKQDTRAEGKGRAARLQRRLLVVEVEKAIMQYQSFVDQGRVKDAECRFGLLLYSLGRLYHASEKHAKATGEWLHLRQDILDLGKTSLPTSDKLRITWRMERVYDCLLPALKRS* 1972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1540002 1584055 - Chy5G092400.1 Chy05g00194 226421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00194 1971 Gene3D - 350 538 IPR027417 -
Chy05g00194 1971 SMART BRCT_7 216 294 IPR001357 -
Chy05g00194 1971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 599 IPR027417 -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 931 960 - -
Chy05g00194 1971 SUPERFAMILY Histone-fold 980 1049 IPR009072 GO:0046982
Chy05g00194 1971 SMART AAA_5 402 540 IPR003593 -
Chy05g00194 1971 Pfam ATPase family associated with various cellular activities (AAA) 406 518 IPR003959 GO:0005524|GO:0016887
Chy05g00194 1971 MobiDBLite consensus disorder prediction 81 131 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1182 1197 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 32 54 - -
Chy05g00194 1971 SUPERFAMILY post-AAA+ oligomerization domain-like 610 755 IPR008921 GO:0003677|GO:0006260
Chy05g00194 1971 Gene3D Histone, subunit A 960 1048 IPR009072 GO:0046982
Chy05g00194 1971 MobiDBLite consensus disorder prediction 148 163 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 55 74 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 296 325 - -
Chy05g00194 1971 Pfam Replication factor RFC1 C terminal domain 679 841 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Chy05g00194 1971 MobiDBLite consensus disorder prediction 872 907 - -
Chy05g00194 1971 CDD BRCT_RFC1 214 292 - -
Chy05g00194 1971 CDD HLD_clamp_RFC 539 597 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1054 1090 - -
Chy05g00194 1971 Gene3D BRCT domain 191 293 IPR036420 -
Chy05g00194 1971 Coils Coil 1811 1831 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1 20 - -
Chy05g00194 1971 ProSiteProfiles BRCT domain profile. 214 292 IPR001357 -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1051 1147 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 927 971 - -
Chy05g00194 1971 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 939 - -
Chy05g00194 1971 CDD AAA 391 539 - -
Chy05g00194 1971 SUPERFAMILY BRCT domain 216 293 IPR036420 -
Chy05g00194 1971 Gene3D - 611 723 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1 216 - -
Chy05g00194 1971 Pfam BRCA1 C Terminus (BRCT) domain 216 291 IPR001357 -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1110 1147 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 294 344 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 1182 1204 - -
Chy05g00194 1971 MobiDBLite consensus disorder prediction 198 213 - -
Chy05g00194 1971 PANTHER REPLICATION FACTOR C SUBUNIT 1 14 939 - -
Chy05g00194 1971 Pfam ATP synthase regulation protein NCA2 1687 1961 IPR013946 -
Chy05g00194 1971 Gene3D - 539 609 - -
Chy05g00194 1971 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 973 1033 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00194 Chy-Chr5:1540002 Chy10g00706 Chy-Chr10:13408346 7.22E-57 dispersed
Chy08g00054 Chy-Chr8:1871086 Chy05g00194 Chy-Chr5:1540002 1.35E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17970 PF08637 NCA2 8.20E-69 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00194 K10754 - csv:101204361 1786.16