Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00195 ATGTCACTGGACATGATGGCTTCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACATTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCATAAACAACAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTACTAAATCCACCAAAATTGGTTCTCTTGATTCTTCTGCAGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAACGTGTTCCATCGGCATATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATGTGATTGAAGAATGGGTCTGTCACTGA 486 41.98 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNVIEEWVCH* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1593841 1609488 + Chy5G092410.1 Chy05g00195 226422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00195 161 MobiDBLite consensus disorder prediction 58 95 - -
Chy05g00195 161 MobiDBLite consensus disorder prediction 58 121 - -
Chy05g00195 161 MobiDBLite consensus disorder prediction 96 113 - -
Chy05g00195 161 Pfam YABBY protein 7 153 IPR006780 GO:0007275
Chy05g00195 161 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 155 - -
Chy05g00195 161 Gene3D High mobility group box domain 99 159 IPR036910 -
Chy05g00195 161 SUPERFAMILY HMG-box 109 151 IPR036910 -
Chy05g00195 161 PANTHER PROTEIN YABBY 6-RELATED 6 155 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00195 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101222154 293.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00195 Chy-Chr5:1593841 Chy09g01118 Chy-Chr9:13448472 3.81E-31 dispersed
Chy05g00195 Chy-Chr5:1593841 Chy06g02018 Chy-Chr6:24129827 2.55E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01118 CCT 27 188 C2C2-YABBY Transcription Factor Family AT2G45190 58.8 1.2e-41 166.4
Chy05g00195 . 1 153 C2C2-YABBY Transcription Factor Family AT1G08465 64.5 5.9e-45 177.6
Chy09g01118 CCT 1 186 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 1.7e-48 189.5
Chy05g00195 . 1 153 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 2.1e-38 155.6
Chy09g01118 CCT 1 148 C2C2-YABBY Transcription Factor Family AT2G26580 54.6 1.8e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17971 PF04690 YABBY 2.90E-65 CL0114 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00195 Chy_Chr05 FPKM 0.787546 0.463421 2.073437 3.059986 0.498567 0.744446 0.661551 1.751901 2.103307 2.999479