Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00195 ATGTCACTGGACATGATGGCTTCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACATTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCATAAACAACAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTACTAAATCCACCAAAATTGGTTCTCTTGATTCTTCTGCAGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAACGTGTTCCATCGGCATATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCATAGAGAAGCCTTTAGCACAGCAGCTAAAAATGTGATTGAAGAATGGGTCTGTCACTGA 486 41.98 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNVIEEWVCH* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1593841 1609488 + Chy5G092410.1 Chy05g00195 226422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00195 161 MobiDBLite consensus disorder prediction 58 95 - -
Chy05g00195 161 MobiDBLite consensus disorder prediction 58 121 - -
Chy05g00195 161 MobiDBLite consensus disorder prediction 96 113 - -
Chy05g00195 161 Pfam YABBY protein 7 153 IPR006780 GO:0007275
Chy05g00195 161 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 155 - -
Chy05g00195 161 Gene3D High mobility group box domain 99 159 IPR036910 -
Chy05g00195 161 SUPERFAMILY HMG-box 109 151 IPR036910 -
Chy05g00195 161 PANTHER PROTEIN YABBY 6-RELATED 6 155 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00195 Chy-Chr5:1593841 Chy09g01118 Chy-Chr9:13448472 3.81E-31 dispersed
Chy05g00195 Chy-Chr5:1593841 Chy06g02018 Chy-Chr6:24129827 2.55E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17971 PF04690 YABBY 2.90E-65 CL0114 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00195 K25796 - csv:101222154 293.123