Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00202 ATGAAAATGGAAGATCATTTAGAAGAAAATGGTGGAATTGAAGTCCCTTCCTATTTCCTTTGTCCAATTTCCCTTCAACTCATGCGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGTTCCAGCATTGAAAAGTGGTTTTTTTCATTCAACAAAACTGTTTGTCCCATTACTAAGCAACCCTTATCATCCGATCCTGATTTACTTACCCCCAATCATACTCTTCGTCGTTTGATTCAATCTTGGTGTACGCTCAATGCTTCTAATGGAATTGAAAGAATTCCAACTCCGAAGTCTCCTATTGACAAAACCCATATTGCCAAAATCCTTAAACAAGCTCAAAGTTTCCCTGATTCCAACCATAAATGTCTCCTTGCTCTTAAAGCTATTGCCTTGGAGAATGAGAGAAATCGCAATCTTGTGGCTCAATCTGATGGGGCTTTTGATTTTCTAGCTATGGTTATCAAGAGTGGTGGTAGTAATAATATTGCTTCTGTTGAGTTAGCTGTGGAAATTCTCTTTCATATCAAATCCTCTCAAACCCATCTCAAGAATCTCGTAAATGGTGATGTTGATTTCATTAACTCTCTTACTTTTGTTCTGCAAAATGGGAATTGTCAATCTAGAGCTTATGCGGTAATGTTGCTTAAATCAAGTTTGGAACTTGCTGATCCAATTCGTTTGATGAGTATTGAGAGGGAACTTCTTAGAGAAAGTGTTCGTGTGATTCATGATCATATTTCTCATCAAGCATCGAAATCGGCGTTGAAGGTTCTCGCTGAGGTTTGTCCGTGGGGGAGGAATCGTGTGAAGGCAGTCGAGGGTGGTGCAGTTGGGGTGTTAGTGGAGTTGCTTTTGAATTCGACGGAGAGGCGGTGGTCGGAGTTAGGGTTGGTGATTCTGGATCAGCTTTGCGGGTGTGCGGAGGGGCGGGAGAAGCTCGTGGAACATGCGGCTGGGCTTGCGGTTGTGTCTAAGAAAATACTTAGGGTTTCGGCCATGGCGAGTGATCGTGCAGTGAGGATATTGTCATCGATTTGTAGGTTTTCAGCATCGGCGAAAGTGATGCAAGAGATGTTGGAGGTTGGGGTGGTGGCAAAGCTGTGTTTAGTATTGCAAATGGATTGTAGTATGAAGACAAGGGAGAAGGCAAGAGATACACTAAAGTTGCATTCTAGGGTTTGGAGTAATTCTTCTTGTATTCCTCCACATTTGTTGTCTGCTTATCCATCCACTTGA 1245 42.65 MKMEDHLEENGGIEVPSYFLCPISLQLMRDPVTISTGITYDRSSIEKWFFSFNKTVCPITKQPLSSDPDLLTPNHTLRRLIQSWCTLNASNGIERIPTPKSPIDKTHIAKILKQAQSFPDSNHKCLLALKAIALENERNRNLVAQSDGAFDFLAMVIKSGGSNNIASVELAVEILFHIKSSQTHLKNLVNGDVDFINSLTFVLQNGNCQSRAYAVMLLKSSLELADPIRLMSIERELLRESVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSELGLVILDQLCGCAEGREKLVEHAAGLAVVSKKILRVSAMASDRAVRILSSICRFSASAKVMQEMLEVGVVAKLCLVLQMDCSMKTREKARDTLKLHSRVWSNSSCIPPHLLSAYPST* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1692654 1693898 + Chy5G092480.1 Chy05g00202 226429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00202 414 Gene3D - 106 401 IPR011989 -
Chy05g00202 414 CDD RING-Ubox_PUB 19 62 IPR045210 -
Chy05g00202 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Chy05g00202 414 Pfam U-box domain 15 86 IPR003613 GO:0004842|GO:0016567
Chy05g00202 414 PANTHER WDSAM1 PROTEIN 14 412 IPR045185 GO:0061630
Chy05g00202 414 SUPERFAMILY RING/U-box 12 88 - -
Chy05g00202 414 ProSiteProfiles U-box domain profile. 14 91 IPR003613 GO:0004842|GO:0016567
Chy05g00202 414 SMART Ubox_2 18 84 IPR003613 GO:0004842|GO:0016567
Chy05g00202 414 PANTHER OS11G0573500 PROTEIN 14 412 - -
Chy05g00202 414 SUPERFAMILY ARM repeat 119 380 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01591 Chy05g00202 CCT
Chy02g01591 Chy05g00202 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01040 Chy-Chr2:7116973 Chy05g00202 Chy-Chr5:1692654 3.46E-39 dispersed
Chy02g01591 Chy-Chr2:14419847 Chy05g00202 Chy-Chr5:1692654 2.08E-95 dispersed
Chy02g01594 Chy-Chr2:14589805 Chy05g00202 Chy-Chr5:1692654 5.92E-99 dispersed
Chy05g00202 Chy-Chr5:1692654 Chy06g00286 Chy-Chr6:1909392 4.04E-60 dispersed
Chy07g00203 Chy-Chr7:1647917 Chy05g00202 Chy-Chr5:1692654 8.70E-32 dispersed
Chy11g00038 Chy-Chr11:452063 Chy05g00202 Chy-Chr5:1692654 1.04E-35 dispersed
Chy06g01075 Chy-Chr6:8808161 Chy05g00202 Chy-Chr5:1692654 3.18E-58 transposed
Chy06g01338 Chy-Chr6:12838302 Chy05g00202 Chy-Chr5:1692654 5.83E-53 transposed
Chy08g00534 Chy-Chr8:12687813 Chy05g00202 Chy-Chr5:1692654 5.44E-133 transposed
Chy10g00211 Chy-Chr10:5384153 Chy05g00202 Chy-Chr5:1692654 1.03E-54 transposed
Chy04g01856 Chy-Chr4:24750355 Chy05g00202 Chy-Chr5:1692654 2.56E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00202 - - csv:101203877 794.267