Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00202 ATGAAAATGGAAGATCATTTAGAAGAAAATGGTGGAATTGAAGTCCCTTCCTATTTCCTTTGTCCAATTTCCCTTCAACTCATGCGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGTTCCAGCATTGAAAAGTGGTTTTTTTCATTCAACAAAACTGTTTGTCCCATTACTAAGCAACCCTTATCATCCGATCCTGATTTACTTACCCCCAATCATACTCTTCGTCGTTTGATTCAATCTTGGTGTACGCTCAATGCTTCTAATGGAATTGAAAGAATTCCAACTCCGAAGTCTCCTATTGACAAAACCCATATTGCCAAAATCCTTAAACAAGCTCAAAGTTTCCCTGATTCCAACCATAAATGTCTCCTTGCTCTTAAAGCTATTGCCTTGGAGAATGAGAGAAATCGCAATCTTGTGGCTCAATCTGATGGGGCTTTTGATTTTCTAGCTATGGTTATCAAGAGTGGTGGTAGTAATAATATTGCTTCTGTTGAGTTAGCTGTGGAAATTCTCTTTCATATCAAATCCTCTCAAACCCATCTCAAGAATCTCGTAAATGGTGATGTTGATTTCATTAACTCTCTTACTTTTGTTCTGCAAAATGGGAATTGTCAATCTAGAGCTTATGCGGTAATGTTGCTTAAATCAAGTTTGGAACTTGCTGATCCAATTCGTTTGATGAGTATTGAGAGGGAACTTCTTAGAGAAAGTGTTCGTGTGATTCATGATCATATTTCTCATCAAGCATCGAAATCGGCGTTGAAGGTTCTCGCTGAGGTTTGTCCGTGGGGGAGGAATCGTGTGAAGGCAGTCGAGGGTGGTGCAGTTGGGGTGTTAGTGGAGTTGCTTTTGAATTCGACGGAGAGGCGGTGGTCGGAGTTAGGGTTGGTGATTCTGGATCAGCTTTGCGGGTGTGCGGAGGGGCGGGAGAAGCTCGTGGAACATGCGGCTGGGCTTGCGGTTGTGTCTAAGAAAATACTTAGGGTTTCGGCCATGGCGAGTGATCGTGCAGTGAGGATATTGTCATCGATTTGTAGGTTTTCAGCATCGGCGAAAGTGATGCAAGAGATGTTGGAGGTTGGGGTGGTGGCAAAGCTGTGTTTAGTATTGCAAATGGATTGTAGTATGAAGACAAGGGAGAAGGCAAGAGATACACTAAAGTTGCATTCTAGGGTTTGGAGTAATTCTTCTTGTATTCCTCCACATTTGTTGTCTGCTTATCCATCCACTTGA 1245 42.65 MKMEDHLEENGGIEVPSYFLCPISLQLMRDPVTISTGITYDRSSIEKWFFSFNKTVCPITKQPLSSDPDLLTPNHTLRRLIQSWCTLNASNGIERIPTPKSPIDKTHIAKILKQAQSFPDSNHKCLLALKAIALENERNRNLVAQSDGAFDFLAMVIKSGGSNNIASVELAVEILFHIKSSQTHLKNLVNGDVDFINSLTFVLQNGNCQSRAYAVMLLKSSLELADPIRLMSIERELLRESVRVIHDHISHQASKSALKVLAEVCPWGRNRVKAVEGGAVGVLVELLLNSTERRWSELGLVILDQLCGCAEGREKLVEHAAGLAVVSKKILRVSAMASDRAVRILSSICRFSASAKVMQEMLEVGVVAKLCLVLQMDCSMKTREKARDTLKLHSRVWSNSSCIPPHLLSAYPST* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1692654 1693898 + Chy5G092480.1 Chy05g00202 226429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00202 414 Gene3D - 106 401 IPR011989 -
Chy05g00202 414 CDD RING-Ubox_PUB 19 62 IPR045210 -
Chy05g00202 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Chy05g00202 414 Pfam U-box domain 15 86 IPR003613 GO:0004842|GO:0016567
Chy05g00202 414 PANTHER WDSAM1 PROTEIN 14 412 IPR045185 GO:0061630
Chy05g00202 414 SUPERFAMILY RING/U-box 12 88 - -
Chy05g00202 414 ProSiteProfiles U-box domain profile. 14 91 IPR003613 GO:0004842|GO:0016567
Chy05g00202 414 SMART Ubox_2 18 84 IPR003613 GO:0004842|GO:0016567
Chy05g00202 414 PANTHER OS11G0573500 PROTEIN 14 412 - -
Chy05g00202 414 SUPERFAMILY ARM repeat 119 380 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00202 - - - csv:101203877 794.267
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g01591 Chy05g00202 CCT
Chy02g01591 Chy05g00202 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01040 Chy-Chr2:7116973 Chy05g00202 Chy-Chr5:1692654 3.46E-39 dispersed
Chy02g01591 Chy-Chr2:14419847 Chy05g00202 Chy-Chr5:1692654 2.08E-95 dispersed
Chy02g01594 Chy-Chr2:14589805 Chy05g00202 Chy-Chr5:1692654 5.92E-99 dispersed
Chy05g00202 Chy-Chr5:1692654 Chy06g00286 Chy-Chr6:1909392 4.04E-60 dispersed
Chy07g00203 Chy-Chr7:1647917 Chy05g00202 Chy-Chr5:1692654 8.70E-32 dispersed
Chy11g00038 Chy-Chr11:452063 Chy05g00202 Chy-Chr5:1692654 1.04E-35 dispersed
Chy06g01075 Chy-Chr6:8808161 Chy05g00202 Chy-Chr5:1692654 3.18E-58 transposed
Chy06g01338 Chy-Chr6:12838302 Chy05g00202 Chy-Chr5:1692654 5.83E-53 transposed
Chy08g00534 Chy-Chr8:12687813 Chy05g00202 Chy-Chr5:1692654 5.44E-133 transposed
Chy10g00211 Chy-Chr10:5384153 Chy05g00202 Chy-Chr5:1692654 1.03E-54 transposed
Chy04g01856 Chy-Chr4:24750355 Chy05g00202 Chy-Chr5:1692654 2.56E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g816 . . . . Bpe01g00347 . . . Cmo10g00902 Cmo11g00924 Cma10g00862 . . . . . Cpe18g00220 . . . . . . . . . . . . . . . Cone5ag1318 . . . . Chy05g00202 Cme05g00240 . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01173 Cam03g1217 Cec03g1272 Cco03g1244 Clacu03g1250 Cmu03g1829 . . Csa01g03268 Chy02g01591 Cme02g00821
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007470 2 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 1 1 1 1 1 0 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00202 Chy_Chr05 FPKM 1.291769 0.733846 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0