Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00206 ATGGGAAACAAACCCGTGAAGCAAAGGGAAGAAGTTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCTGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTTCTGGGGACTATCACCGCTTCACTCCCGACTCTCGACTCGCCGATCAAGAACCTGATGCTATCCTAGTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCAACTGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGGATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACGAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTAGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATCTTGACGACAATTATGCTGATCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGACGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTCCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGCGGAAGTGCCCCCTAGCTTGCCGTCAAGTTCAGGCTTGAATGAAGCACCTACAACAACACTAGTAACAGAGGATACTAGGGGAAAGGAAATTGAAACGCGGGAGCAAGACGTACACAGAATGTGCTCCGATCTAAATGCATCCCAGGACTTTGTGGGTGGAATTATGAAAATTGTCCCCTCGGTCGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGACGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCCAGCGTTGAGTGGAATGAATTGGGTACATTTAATGAAGATTACAGTATTGGCACTGTCAGCTCACCCCAAACCCAAACTCCACTTCCAAATGATGCACCTGATTTGCCTTCTACTAATCCTTCTAGTAGTTGA 1530 44.97 MGNKPVKQREEVFVKVAPPLDQAFVRWLARDLERIHGFPPRNPCAVKPPDHYIEFMRLYGWLDIMHSLKRQLPFSSMKPPFASSGDYHRFTPDSRLADQEPDAILVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPGSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDLDDNYADLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAAEVPPSLPSSSGLNEAPTTTLVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPSVEWNELGTFNEDYSIGTVSSPQTQTPLPNDAPDLPSTNPSSS* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1743675 1751565 + Chy5G092520.1 Chy05g00206 226433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00206 509 Gene3D - 181 254 IPR036388 -
Chy05g00206 509 MobiDBLite consensus disorder prediction 156 182 - -
Chy05g00206 509 Coils Coil 258 302 - -
Chy05g00206 509 Coils Coil 203 223 - -
Chy05g00206 509 Pfam E2F/DP family winged-helix DNA-binding domain 189 252 IPR003316 GO:0005667|GO:0006355
Chy05g00206 509 Gene3D - 259 369 - -
Chy05g00206 509 SMART E2F_TDP_2 187 252 IPR003316 GO:0005667|GO:0006355
Chy05g00206 509 MobiDBLite consensus disorder prediction 382 401 - -
Chy05g00206 509 SUPERFAMILY E2F-DP heterodimerization region 264 369 IPR037241 -
Chy05g00206 509 Pfam E2F transcription factor CC-MB domain 268 368 IPR032198 GO:0046983
Chy05g00206 509 MobiDBLite consensus disorder prediction 479 509 - -
Chy05g00206 509 PANTHER TRANSCRIPTION FACTOR E2F 65 499 IPR015633 GO:0000978|GO:0006357
Chy05g00206 509 MobiDBLite consensus disorder prediction 383 401 - -
Chy05g00206 509 PANTHER TRANSCRIPTION FACTOR E2FB 65 499 - -
Chy05g00206 509 MobiDBLite consensus disorder prediction 137 182 - -
Chy05g00206 509 CDD E2F_DD 263 369 IPR032198 GO:0046983
Chy05g00206 509 SUPERFAMILY Winged helix DNA-binding domain 187 250 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01393 Chy-Chr3:16688957 Chy05g00206 Chy-Chr5:1743675 1.83E-36 dispersed
Chy05g00206 Chy-Chr5:1743675 Chy08g00971 Chy-Chr8:16991819 3.82E-163 dispersed
Chy05g00206 Chy-Chr5:1743675 Chy02g02548 Chy-Chr2:28752355 1.23E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17973 PF16421 E2F_CC-MB 3.70E-35 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00206 K06620 - csv:101219318 883.248