Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00206 ATGGGAAACAAACCCGTGAAGCAAAGGGAAGAAGTTTTCGTGAAGGTAGCACCTCCTTTGGACCAAGCATTTGTTAGATGGCTAGCTCGTGATCTCGAAAGGATTCATGGCTTCCCCCCGAGAAATCCCTGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGTATGGATGGTTGGACATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTTCTGGGGACTATCACCGCTTCACTCCCGACTCTCGACTCGCCGATCAAGAACCTGATGCTATCCTAGTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCAACTGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGGATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACGAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTAGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATCTTGACGACAATTATGCTGATCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGACGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTCCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGCGGAAGTGCCCCCTAGCTTGCCGTCAAGTTCAGGCTTGAATGAAGCACCTACAACAACACTAGTAACAGAGGATACTAGGGGAAAGGAAATTGAAACGCGGGAGCAAGACGTACACAGAATGTGCTCCGATCTAAATGCATCCCAGGACTTTGTGGGTGGAATTATGAAAATTGTCCCCTCGGTCGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGACGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCCAGCGTTGAGTGGAATGAATTGGGTACATTTAATGAAGATTACAGTATTGGCACTGTCAGCTCACCCCAAACCCAAACTCCACTTCCAAATGATGCACCTGATTTGCCTTCTACTAATCCTTCTAGTAGTTGA 1530 44.97 MGNKPVKQREEVFVKVAPPLDQAFVRWLARDLERIHGFPPRNPCAVKPPDHYIEFMRLYGWLDIMHSLKRQLPFSSMKPPFASSGDYHRFTPDSRLADQEPDAILVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPGSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDLDDNYADLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAAEVPPSLPSSSGLNEAPTTTLVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPSVEWNELGTFNEDYSIGTVSSPQTQTPLPNDAPDLPSTNPSSS* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1743675 1751565 + Chy5G092520.1 Chy05g00206 226433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00206 509 Gene3D - 181 254 IPR036388 -
Chy05g00206 509 MobiDBLite consensus disorder prediction 156 182 - -
Chy05g00206 509 Coils Coil 258 302 - -
Chy05g00206 509 Coils Coil 203 223 - -
Chy05g00206 509 Pfam E2F/DP family winged-helix DNA-binding domain 189 252 IPR003316 GO:0005667|GO:0006355
Chy05g00206 509 Gene3D - 259 369 - -
Chy05g00206 509 SMART E2F_TDP_2 187 252 IPR003316 GO:0005667|GO:0006355
Chy05g00206 509 MobiDBLite consensus disorder prediction 382 401 - -
Chy05g00206 509 SUPERFAMILY E2F-DP heterodimerization region 264 369 IPR037241 -
Chy05g00206 509 Pfam E2F transcription factor CC-MB domain 268 368 IPR032198 GO:0046983
Chy05g00206 509 MobiDBLite consensus disorder prediction 479 509 - -
Chy05g00206 509 PANTHER TRANSCRIPTION FACTOR E2F 65 499 IPR015633 GO:0000978|GO:0006357
Chy05g00206 509 MobiDBLite consensus disorder prediction 383 401 - -
Chy05g00206 509 PANTHER TRANSCRIPTION FACTOR E2FB 65 499 - -
Chy05g00206 509 MobiDBLite consensus disorder prediction 137 182 - -
Chy05g00206 509 CDD E2F_DD 263 369 IPR032198 GO:0046983
Chy05g00206 509 SUPERFAMILY Winged helix DNA-binding domain 187 250 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00206 K06620 E2F3; transcription factor E2F3 - csv:101219318 883.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01393 Chy-Chr3:16688957 Chy05g00206 Chy-Chr5:1743675 1.83E-36 dispersed
Chy05g00206 Chy-Chr5:1743675 Chy08g00971 Chy-Chr8:16991819 3.82E-163 dispersed
Chy05g00206 Chy-Chr5:1743675 Chy02g02548 Chy-Chr2:28752355 1.23E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1279 . . Bda02g00682 . Bpe01g00264 . . . . . . . . . . . . . . . . . . . Cla02g02173 Cam02g2316 Cec02g2353 Cco02g2396 Clacu02g2291 Cmu02g2223 Cre02g2546 . . . . . Csa06g02466 Chy05g00206 . . . . . . . . Bma11g00247 . . Cmo20g00167 . Cma20g00152 . Car20g00132 Cpe16g00821 . Bhi10g00183 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17973 PF16421 E2F_CC-MB 3.70E-35 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00206 Chy_Chr05 FPKM 6.718238 6.328312 4.154772 4.021865 3.239068 3.54548 2.996599 2.672647 2.263969 2.415501