Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00223 ATGCAGGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTTGAGAAGATCGGCTCTAGCATCCGTAAATCTCGAAATGGACTGTTCTCTAAGCAGTCACTCCGGGCTCTGCCTCCGGTTGCAAAGGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGTGGTGCTTTTGGTCGAGTTTATATGGGAATGAATCTCGATTCTGGGGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCTGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGCTGGAGGAAGAAGTGAGGCTTTTGAAGAACCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTCTTAGGGAAATTTGGGTCTTTTCCTGAGTCTGTTATAAAGACCTACACGAAGCAGCTATTATTGGGGCTTGAGTACCTTCACAAAAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCTACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTCATTGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACCAAGTCCCATCCGCCCATTCCAGAGCATCTATCCGCTGAGGCTAAAGACTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTACCAAGAACCTATTGCAGCAGTCCGTGCCTCTTCTATGGAATCTGGGAAACAAATGGCTGATACTAGGCTGAACTCTAATGATCTGAAAAAGTCTACAATCCTACGTTCAACCTGTGAGGGACTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACGGTCCAACTGGGGCTCGAGCAATTTTGAGGATGACATGTGCCGGATAGATGATAAAGATCTGTTTGCTAGTTCATCAATGAAGTACAATTCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACTTGGATGAGAGTTCAGAGTTGGGAGGCAATCTGATGGAGTTGTCCAGCGTCCAAACTGTCAAGGGGAACGACTCCACTTTTCCATGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACAGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAATTGAAGAAGCTCCAAACACCTTTATACGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCCATAGGAACAGTTGGAATTGAGAATATCAAGAGTGTATCTAATTTTTTGAAATTACCTCCCAAATGTGGATCACCAAGTAAGCTGCGTGGAAAAAGACTCTCATCAGTTGATGTTGGTAACTATTCTAACCGTCAGAGCCGTATAAAACAAGCTAGTATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCACCTCAACTTGGGGAATGGAACAAATTACTTCAAAACCAGCCAGACTCTTCCACACTAAGTTTCGCTGAAAGACAAAGGAAATGGAAAGAGGAGCTTGAGGAAGAACTTAAAAGGAAACGAGATAGAAAGTATGATAACGGAAATGCCGTGCATATTGCAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCGCTAG 1950 43.79 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPIAAVRASSMESGKQMADTRLNSNDLKKSTILRSTCEGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCRIDDKDLFASSSMKYNSIISSNDLNKSFNPMCEPTDDLDESSELGGNLMELSSVQTVKGNDSTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANAIGTVGIENIKSVSNFLKLPPKCGSPSKLRGKRLSSVDVGNYSNRQSRIKQASILQDRALQEIQSPQLGEWNKLLQNQPDSSTLSFAERQRKWKEELEEELKRKRDRKYDNGNAVHIAEMMRRGIVGAIR* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1844743 1849385 + Chy5G092690.1 Chy05g00223 226450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00223 649 CDD STKc_MAPKKK 65 327 - -
Chy05g00223 649 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 609 - -
Chy05g00223 649 Coils Coil 603 626 - -
Chy05g00223 649 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00223 649 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00223 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Chy05g00223 649 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Chy05g00223 649 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00223 649 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 609 - -
Chy05g00223 649 Gene3D Transferase(Phosphotransferase) domain 1 65 367 - -
Chy05g00223 649 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Chy05g00223 649 Coils Coil 98 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01012 Chy-Chr2:6826258 Chy05g00223 Chy-Chr5:1844743 5.46E-17 dispersed
Chy04g01198 Chy-Chr4:18401444 Chy05g00223 Chy-Chr5:1844743 3.92E-72 dispersed
Chy05g00223 Chy-Chr5:1844743 Chy05g01114 Chy-Chr5:15678396 0 dispersed
Chy11g00625 Chy-Chr11:7372794 Chy05g00223 Chy-Chr5:1844743 3.07E-53 dispersed
Chy05g00223 Chy-Chr5:1844743 Chy06g00957 Chy-Chr6:7050402 1.38E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71261 PF00069 Pkinase 4.90E-73 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00223 - K20606 csv:101217427 1215.29