Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00225 ATGACGATGGCGATACCTGGGAACATTGTCGTTCTTCTTCTCCTTATGTTGCTTCTCATCCTCCTTCTCCTCCTCATTACCTGTAAACCATGGCGTTTCTTTTCATATTCCCGTTCTCGCATCATCAAGGTTCCTGACCTTGACCTTGAGAGACCACTTGTCTCTGATGCTGCGGATGTCACTCAAAACCAATTCAGTGAGCCTCCCATTGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCAAGATTACAGGGACTGATTCATAAACAAAGACTGCCACCTACATCTCCCCATTCAAGTCAGGGTGATAGATTGGTTCAAGATGTAGTTCCCAATCCTTTAGAAGTTATTTCAGTTGGTCAAACCCTTAAACGTACTTTCTTTCCAAACCAGATTCCAAACCAGATTCCAGAAGTTCAAAAGCATGCAAAACTGAGTCCGGGAAGTGAGCAACTCCACGAAATTGCAAGTCAAGATATTTCACATGGAAGAAGTTACCTCACTTTGGAGGTCACCTCCGGTCCTTCTCGTGGAGTTCGTTATTCAATACATTCTGCAAACACATCGAGGCTCCCATTGACGCTTGGAAGAGTACCCCAGAGTGATTTACAGTTGAAAGATTCAGAAGTCTCAGGGAAGCACGCATTGATAAAATGGAATCTAAATAGTATGAAATGGGAGCTTGTGGACTTGGGCAGCTTAAATGGGACCTTATTAAATTCTCAACCAATTAACAATCCTGATTCTGGAAGTAGACATCGGGGTGAACCAGTCGAGCTTGCGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACAGCTCAGGTTGAGAACCATATTCCCTTTGGAATTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTGCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGTGATGGACATAGTGGAGTAGCGGCTGCCAAATCTGCTAGCGAAATGCTTCCGGAGAAAGTTGCCACAATTCTATCTGATCCACTAAAAAGGGAGAGGGTAGTATCTCTTCATGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGTATGAATCACTATTACGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGACTGATAGTGATGAAAATTATTTTGTGCAATGTGCGAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTCATGGAAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTATTCAGAAAGACTTCGAATAGAACAAGCAGGAGAACCACTGAAAGATGGAGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCGTCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCTGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGCGTGAAGAAGGCAATGCAGCTGGCCATTCAGGCTAGGGAAAGATACTCGACAAGTGCCGAAAATTCAGCCGAAAAGGTTGCGAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTAATAGAATCACTTGTAAAGTTGAACCATAA 1740 42.76 MTMAIPGNIVVLLLLMLLLILLLLLITCKPWRFFSYSRSRIIKVPDLDLERPLVSDAADVTQNQFSEPPIDYDLEGALQTDGHFRSPRLQGLIHKQRLPPTSPHSSQGDRLVQDVVPNPLEVISVGQTLKRTFFPNQIPNQIPEVQKHAKLSPGSEQLHEIASQDISHGRSYLTLEVTSGPSRGVRYSIHSANTSRLPLTLGRVPQSDLQLKDSEVSGKHALIKWNLNSMKWELVDLGSLNGTLLNSQPINNPDSGSRHRGEPVELASGDVITLGTTSKVYVHITAQVENHIPFGIGLASDPMALRRGGKKLAMEDVCYYQWPLAGVDQFGLFGICDGHSGVAAAKSASEMLPEKVATILSDPLKRERVVSLHDASDVLREAFSQTEACMNHYYEGCTATVLLVWTDSDENYFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDRRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAMQLAIQARERYSTSAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSNRITCKVEP* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1873753 1879428 + Chy5G092710.1 Chy05g00225 226452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00225 579 Pfam Protein phosphatase 2C 307 560 IPR001932 -
Chy05g00225 579 CDD PP2Cc 307 567 IPR001932 -
Chy05g00225 579 ProSiteProfiles Forkhead-associated (FHA) domain profile. 199 250 IPR000253 GO:0005515
Chy05g00225 579 ProSiteProfiles PPM-type phosphatase domain profile. 295 567 IPR001932 -
Chy05g00225 579 PANTHER PROTEIN PHOSPHATASE 2C 36 578 IPR015655 GO:0004722|GO:0006470
Chy05g00225 579 CDD FHA 173 281 IPR000253 GO:0005515
Chy05g00225 579 SUPERFAMILY SMAD/FHA domain 172 283 IPR008984 GO:0005515
Chy05g00225 579 SUPERFAMILY PP2C-like 309 567 IPR036457 -
Chy05g00225 579 PANTHER PROTEIN PHOSPHATASE 2C 70 36 578 - -
Chy05g00225 579 Gene3D - 167 302 - -
Chy05g00225 579 Pfam FHA domain 200 275 IPR000253 GO:0005515
Chy05g00225 579 Gene3D - 303 570 IPR036457 -
Chy05g00225 579 SMART FHA_2 198 250 IPR000253 GO:0005515
Chy05g00225 579 SMART PP2C_4 289 565 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00225 Chy-Chr5:1873753 Chy07g00305 Chy-Chr7:2510023 5.36E-19 dispersed
Chy05g00225 Chy-Chr5:1873753 Chy04g00256 Chy-Chr4:2272719 4.15E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00225 K01090 - csv:101217195 1127.85