Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00231 ATGTTGTCGAATCAGCTTCAAAATGGAATGGATAGAGCAAAAAACATGTGGTCTCTTCTTCCGAACACCGACGAAAATGAGGATGACCTTCTTAGTATCTTGAAGAAAAACGACGGGGGTGGTGTCGAAAGCCTTGATTATGAGGTTATTGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGGAAATTATTTGTTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGTTCATCGGTATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATGTGGCTGGTTTTATAGTGTACTTAGCTATCAACTTGGCTCTAGTATTTTCATCCGTATATATTGTCACACACTTTGCTCCTGCGGCAGCTGGATCTGGCATACCTGAAATCAAGGGATATTTGAATGGAATTGACATACACGGAGTTCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTAGCTTTAGGCAAAGAAGGGCCTCTTGTACACACAGGCGCATGTATTGCTTCTTTGTTAGGCCAAGGTGGATCTTCTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTCGTTACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACTTCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGCGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTGGGAGCGTTATTCAACCAGCTTACTCTTTATATAACATATTGGCGTCGAAACCATTTACACAAGAAGGGAAACCGTGTCAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATCTCCTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCCGATCCGGAATTAGGAAATGAATGCCCAAGGCCTCCAGGAACATATGGGAATTATGTTAATTTTTATTGTAGCAAGGACAATGAATACAATGACCTTGCAACTATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCACGAAGTTTATTGACCTTTCTGGTAATGTTTTATACTTTAGCTGTCGTGACATTTGGTACTGCAGTTCCTGCTGGCCAATTTGTTCCTGGTATAATGATTGGATCTACATATGGACGCTTGGTTGGAAAATTTGTGGTTAGTTTCTACAAGAAGCCTAACATTGAAGAGGGAACATATGCCTTGTTGGGTGCTGCATCTTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTCCTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAAGGGTATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCCTTCCCCCGTGTTGCTAAGGTTGCTGATGTTGTTAGTATTTTACGGAGCAACAGACATAACGGCTTTCCTGTGATTGATTACTCTCGAAATGGAGAGACACGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTCCAGTCCAAAGTAGATTTTCAGCATAGTCCCTTACCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATCGATCTACTTCCATATCTGAACCCATCTCCATATATTGTCCCTGAGGACATGTCTCTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTTTGAGACACGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGTTTGATTACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGAGCTCGTCGTCCAGATAGAAGAGTACATACAAGGAATGGGGATGTGGAGAGTCCACTTCTTAATGGACTTTTGGTCAGTAACACCGATGGCTGA 2394 42.15 MLSNQLQNGMDRAKNMWSLLPNTDENEDDLLSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLALVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSSKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVAKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSISSRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRARRPDRRVHTRNGDVESPLLNGLLVSNTDG* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1925832 1933323 + Chy5G092770.1 Chy05g00231 226458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00231 797 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 Pfam CBS domain 587 643 IPR000644 -
Chy05g00231 797 Pfam CBS domain 703 749 IPR000644 -
Chy05g00231 797 MobiDBLite consensus disorder prediction 760 781 - -
Chy05g00231 797 ProSiteProfiles CBS domain profile. 702 758 IPR000644 -
Chy05g00231 797 SMART cbs_1 592 644 IPR000644 -
Chy05g00231 797 SMART cbs_1 705 753 IPR000644 -
Chy05g00231 797 CDD ClC_6_like 43 572 - -
Chy05g00231 797 SUPERFAMILY CBS-domain pair 577 749 IPR046342 -
Chy05g00231 797 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy05g00231 797 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g00231 797 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g00231 797 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g00231 797 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g00231 797 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy05g00231 797 ProSiteProfiles CBS domain profile. 589 649 IPR000644 -
Chy05g00231 797 Gene3D Clc chloride channel 69 573 - -
Chy05g00231 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 749 - -
Chy05g00231 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 789 - -
Chy05g00231 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 789 - -
Chy05g00231 797 SUPERFAMILY Clc chloride channel 52 574 IPR014743 -
Chy05g00231 797 MobiDBLite consensus disorder prediction 766 780 - -
Chy05g00231 797 Gene3D - 574 756 IPR046342 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00231 Chy-Chr5:1925832 Chy06g01639 Chy-Chr6:19009807 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00231 K05016 - csv:101215989 1544.64