Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00254 ATGCTCTCTTTTTTAGCTGCAATACTGTTAATAATATCGATTGCTTTTGTGTTGAGAAGCAATAAGAGAAGCAGAAATGTCCCACCAGGAGAAATGGGTCTACCTTGGATTGGAGAAACAATGGCTTTTTACAGTGCTCAAAGTAAAAACAGATTGTTTGAAGACTTTGTTGAGCCAAGAGTTGCAAAATATGGAAAAATCTTCAAAACAAACTTAATGGGATCTCCAACAGTGGTTGTTAATGGAGCTGAAGCCAATAGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTAAGTTCATGGCCATCAAGCTCTGTTCAGTTGATGGGTGAAGAATGTATTATGCAGAAGGAAGGTGAAAAGCATAGATGTGTTCGTGGTCTTATAGCTGCAACTCTTTCTACGTCGAGTCTTGAAGTTATGATGCCTAAACTTTGCAATACAATTCAAGTTTATTTGGATACTAAATGGGTTGGTTGTGACACAATTGGTCTCTTTCACTCGGCTAAAGTATTGACATTTACAATTGTTTTTGAGTGTTTATTGGGTATTCAAGTGGAGCCACGTGTGTTGAGGATGTTCGAGAGGGTTTTGGAAGGTGTTTTTGCACCACCATTCAGGTTTCCAGGAACAAGATTTTCAAGAGCCAAGAAAGCAAGACTGGAGATAGAGACAATGCTAAGGGACGCGGTGAGAGAGAAGAGAAGAAAAATTGAAGGAAAGCTAGAAGAAGAATGTGGGTCATTGCTTTCAAGGATGGTGAAAGCAATGATAGGAGGGGAAATTAGTGAAATGGAAGTCATAGACAATATTGTTTTGCTTGTTTTTGCAGCTCATGATACAACCTCCTTTGCCATTGCCATGACTTTCAAAATGTTGTCTCAGCACACAAACTGCTACTCACTTCTTCTCCAGGAACACACTGACATAGTAAGAAGCAAGGGGCCAGGCCAGAATTTGACAATGGAAGACATAAAGAAGATGAAATATACTTGGCAGGTAGCTCGTGAGAGCATTAGGTTGTTTCCCCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATATGAGAGCTTTCTCATTCCCAAAGGATGGAAGGTCTTGTGGACGACGTACGGAACACATTACGGAGAAGAGTACTTTGAGGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCTCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTAGCGAAATTGAACATACTCATCTTTATACACTCGGTTGTAACTCGTTATGATTGGAGTTTAGTTCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTATCCCTTATCATGGAATGCCTATTAAGATTTCCCCAAAATCAGAAGTTTGTCCCAATGTTCACCAAATGTAA 1425 40.0 MLSFLAAILLIISIAFVLRSNKRSRNVPPGEMGLPWIGETMAFYSAQSKNRLFEDFVEPRVAKYGKIFKTNLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSSSVQLMGEECIMQKEGEKHRCVRGLIAATLSTSSLEVMMPKLCNTIQVYLDTKWVGCDTIGLFHSAKVLTFTIVFECLLGIQVEPRVLRMFERVLEGVFAPPFRFPGTRFSRAKKARLEIETMLRDAVREKRRKIEGKLEEECGSLLSRMVKAMIGGEISEMEVIDNIVLLVFAAHDTTSFAIAMTFKMLSQHTNCYSLLLQEHTDIVRSKGPGQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIEYESFLIPKGWKVLWTTYGTHYGEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHSVVTRYDWSLVHPDEPIIMDPLPIPYHGMPIKISPKSEVCPNVHQM* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2138579 2140504 - Chy5G093000.1 Chy05g00254 226481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00254 474 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS P450 superfamily signature 333 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS P450 superfamily signature 277 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS P450 superfamily signature 404 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PANTHER CYTOCHROME P450 26 18 463 - -
Chy05g00254 474 Pfam Cytochrome P450 28 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 Gene3D Cytochrome P450 17 464 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS E-class P450 group I signature 266 283 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS E-class P450 group I signature 372 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy05g00254 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506|GO:0016705
Chy05g00254 474 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 18 463 - -
Chy05g00254 474 SUPERFAMILY Cytochrome P450 21 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00621 Chy-Chr2:3773447 Chy05g00254 Chy-Chr5:2138579 8.76E-67 dispersed
Chy05g00254 Chy-Chr5:2138579 Chy06g01005 Chy-Chr6:7595783 1.18E-94 dispersed
Chy05g00254 Chy-Chr5:2138579 Chy07g00130 Chy-Chr7:1110303 9.84E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00254 - - csv:101220115 924.465