Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00262 ATGGCGGCACTTAGTAAATGGTCTTCTCTGTCTCTCTTTGCCCTTGCATTGCTGTTCTTCCTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCCAAAATTCGGACTGTGTCAGCGGCGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGGTGGAGAATTATGATGTGGAGCAAGAACTCAACAATGAACATGCTGTGGATAATCCTGATGAGATTGCTGCTTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGGAATCCCATTGACGACTGCTGGCGTTGTGACTCCAATTGGCACCGTAACCGTAAACGCCTTGCGGAATGTGGCATTGGATTTGGTCGGAATGCTATTGGTGGACGTGATGGCCGTTTCTATGTTGTCACTGATTCGAGTGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTTATTCAAGAGAAACCTCTTTGGATAGTGTTCAAAAGGGACATGGTGATTCGATTGAAACAGGAACTAATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACACATTGCTAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTACACATCCATGATTGCAAACCCACAGGGAATGCCATGGTGAGAAGCTCTCCATCTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGTTCAAGCCATATATGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTTATGGGCTCAACTGCAATCACGATCTCCAACAATCACTTCACTCATCATAATGAGGTGATGCTTCTAGGCCACAGTGATTCCTACACGAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAAGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAATCCCACCATCAATAGTCAAGGAAACAGATATGCTGCGCCAACTAACCCTTTTGCCAAAGAGGTGACAAAGCGAGTCGAAACACCGGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGCTGAATGGAGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCTTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGGTTCACTCCCTTGTCGTCGAGGCCATCCATGCTAG 1350 46.44 MAALSKWSSLSLFALALLFFLTIALVRKEETSKIRTVSAAEFQSSSNSSMATRVENYDVEQELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIRLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC* 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2297202 2300372 - Chy5G093080.1 Chy05g00262 226489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00262 449 Pfam Pectate lyase 187 364 IPR002022 -
Chy05g00262 449 SMART amb_all 175 372 IPR002022 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Chy05g00262 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Chy05g00262 449 PANTHER PECTATE LYASE 18-RELATED 21 446 IPR045032 GO:0030570
Chy05g00262 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
Chy05g00262 449 Gene3D - 100 442 IPR012334 -
Chy05g00262 449 PANTHER PECTATE LYASE 21 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy05g00262 Chy06g00395 CCT
Chy05g00262 Chy06g00395 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00418 Chy-Chr2:2640386 Chy05g00262 Chy-Chr5:2297202 1.85E-147 dispersed
Chy04g00894 Chy-Chr4:12178723 Chy05g00262 Chy-Chr5:2297202 0 dispersed
Chy04g01518 Chy-Chr4:21773250 Chy05g00262 Chy-Chr5:2297202 3.31E-163 dispersed
Chy05g00262 Chy-Chr5:2297202 Chy12g01211 Chy-Chr12:16852088 0 dispersed
Chy10g00978 Chy-Chr10:15262669 Chy05g00262 Chy-Chr5:2297202 3.20E-169 dispersed
Chy05g00262 Chy-Chr5:2297202 Chy06g00395 Chy-Chr6:2675533 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00262 K01728 - csv:101217580 882.093