Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00265 ATGTTGTATTGTTTCGAATCCGGGTCGGTTTCGAGTGCAAAACTTGTTGTGGTTTTGCTACTACTGGCTTGTCTGTTTAATATTTCACATGGGTTGAATCAAGAAGGGCATTTTCTGTTGGAGTTGAAAAATAATATTTCTGATCCATTTGGTTCTTTGAGAAATTGGGATTCAAGTGATGAGACACCGTGTGGATGGACTGGTGTCAACTGTACTTCTAGTGAGGAACCAGTCGTCTATTCTCTTGACTTGAGCTCAAAGAATCTTTCAGGGTCCTTAAGCTCAAGCATTGGTAAGTTGATCCACCTGACTTATCTCAATGTTTCCTTCAATGAATTCACCGGAAGTATACCGAAAGAGATCGGCGATTGTATCAGGTTGGAATATCTCATTCTGAACAACAATAAGTTTAATGGGCAACTTCCATCTGAACTGGGAAGGCTGACCTCTTTGGTGAAGTTGAATATATGTAATAATGGAATCCATGGTTCTTTTCCTGAAGAAATTGGGAACTTGAAATCCTTGGTTGAATTAGTTGCATATACCAACAATATCACGGGTCCGTTGCCTCGTTCTTTTGGGAAACTAAAGGGCTTGAGAATATTTAGAGCAGGACAAAATGCGATTTCAGGAAGCTTACCGGCTGAAATAGGTCAGTGTGAGAACTTGGAAACACTTGGCCTTGCTCAAAACCAGTTAGAAGGGGATTTACCAAAGGAGCTTGGCATGCTTAAAAACTTGACTGAATTGATCCTTTGGGAGAACCAAATTTCTGGCATTCTACCAAAAGAGCTTGGGAATTGTACAAGTCTAACTGTTTTGGCTTTGTATCAGAACAATCTTGGTGGACCCATACCTAAGGAATTTGGGAACCTAATCTCTTTGATGAAGTTGTATATATACAGAAATGCATTGAATGGAACCATTCCAGCAGAGCTCGGGAACCTTTCTCTGGCGATAGAGGTAGACTTCTCGGAGAACTATTTGACTGGCGAGATACCTAAAGAGTTAAGTAAGATAGAAGGTCTCCAATTACTCTACCTATTTCAAAATCAGCTGACTGGGATTATACCCAATGAACTTAGTAGCCTGAGTAGCTTGACTAAACTTGATCTTTCGATTAACAACCTCACAGGCCCTGTTCCTTTTGGGTTTCAGTATATGCCTTCATTGAGTCAATTGCAGCTTTTCGACAACAGTTTGAGTGGTAGCATTCCACAAGGACTTGGACGTAATAGCCCCCTTTGGGTTGTTGACTTTTCAGACAACCTCTTGACGGGACGAATACCCCCCCATCTATGTCGTCATTCTAATCTGATCATCTTGAACTTGGAGTCCAATAAACATTATGGAAATATACCTACGGGGATCCTGAACTGCAAATCATTGTTGCAAGTTCGTTTAGTTGGAAACAGGTTTACTGGTGGCTTTCCATCAGCATTTTGTAAATTGGTGAACCTTACTGCCATTGACTTGGACCAGAATAGATTCAGTGGTCCGCTTCCTCCAGAAATTCGAAATTGCCAAAAGTTGCAAAGGTTGCATATTGCAAACAATTACTTTACGTCTCATTTGCCAAAGGAGATAGGAAACCTTGTACAGCTGGCAACTTTCAACGTTTCGTCAAATCTTTTTACCGGGCCGATTCCACCTGAAATAGTCAACTGCAAGATTCTCCAACGGCTTGATCTCAGTAACAACTTCTTCGAAAATACTTTGCCAAAAGAGATTGGATCTCTCTTACAATTGGAAATTCTTAGAGTTTCAGATAATAAATTTTCGGGAAGTATACCCAGAGAACTGAAAAACCTCTCCCATTTGACAGAATTGCAAATGGGTGGCAATTCATTCTCTGGTAGCATTCCTTCGGAATTGGGGTCCCTAAAAAGCTTGCAAATCTCTCTGAATCTCAGTTTCAATATGCTAACTGGGACAATACCACTAGAGCTTGGAAATTTGAAACTACTGGAATATCTCCTGCTTAATAACAATAGTTTGACTGGTGAAATACCTAGCTCGTTTGCTGATCTTTCGAGTTTAATGGGCTGCAATTTCTCATACAATGATCTTCGGGGGCCAATCCCTTCAATACCTTTGTTTCAGAACATGCCTCCTAGTAGCTTCGTTGGCAATAAGGGGCTCTGCGGTGGACCTCTTGGCGACTGCAATGGAGATAATGTATCTCCATCTATTCCATCTTTCAAGAGTATGAATGGGCCTCGAGGTAGAATCATAACTGGGATTGCTGCTGCTATAGGTGGAGTTTCTATTGTTCTAATTGGAATAATCTTATATTGCATGAAACGTCCATCCAAAATGATGCAAAACAAGGAAACACAGTCTCTGGATTCAGACGTCTATTTCCCGCCTAAGGAAGGTTTTACTTTCCAAGATCTAATTGAAGCCACAAATAGTTTTCATGAGAGCTGTGTGGTGGGAAAAGGTGCTTGTGGAACTGTATACAAGGCAGTGATGAGTTCTGGACAGATCATTGCTGTCAAGAAGTTAGCATCAAACAGGGAAGGAAGCAACATTGACAATAGTTTTCGAGCTGAGATTTCGACATTAGGAAAGATCAGACATCGCAATATTGTTAAACTATATGGCTTTTGCTATCACCAAGTCGCAGGATCGTACGGATACATCGCTCCTGAATATGCATACACGATGAAGGTCACAGAAAAATGTGACATATACAGCTATGGGGTAGTTTTACTTGAACTGCTAACTGGAAAAACACCAGTACAGCCAATTGATCAGGGAGGTGATCTCGTCACATGGGTCAAGAACTCTATGCGAGACCATTCGATGTCGTCCGGAATGCTAGATCAGCGGTTGAATCTTCAAGATCAAGCCACGGTCAATCACATGCTGACAGTCCTAAAAATTGCTTTAATGTGCACAAGTTTGTCCCCATTTCATCGTCCATCGATGCGGGAAGTTGTATCTTTGCTTTTAGAATCTACCGAGCCAGACGAAGATCATATTCCAGCTTTAACATATAATATAGCTCCAAATGACGCTATTCTTCAAGATCAAGCCACAGTCAATCATATGTTGACAGTCCTCAAATTTGCTTTAATGTGCACTAGTTTGTCTATATTTCATCGATCCAGGAAGTTATCTCTTTGCTTTTTAAAATCTTCTGAACTTGACGAAGATTATATTTCACCTTTGGATATGTCTGAGAATTTGAATGTTATTATGTGGGGAAGATGCCTTCTTCCGACACAACCCACAAACACAGAGTTCTATTGCAATAAACTCTATCTCTCCCATCCTTATAGGTATCGAAGTAATGAAAAAAACCAAGCCATTCATAGAGTATTTGTTATGTTGACTGTTACTCGCGCATTTTGGAAGATTGATCCTTCGATAATGATTAAATCAGTGAAAAACAATGATATCAACAAAGATAATATAAGAAAACCCTTCCAATCTCCACCGATTACAGTCAACATAACAAATGCCCTAAAAGATGTGAATAATCAACTCACTATTCACTGCAAATCTGGTGATGATGACTTGGGAGTCCACCAACTGTCACATTTGGCTAGTTACGCCTTCAATTTTCGACCAAACTTCTGGGGCTCAACCTTAGGGGCATGA 3609 40.4 MLYCFESGSVSSAKLVVVLLLLACLFNISHGLNQEGHFLLELKNNISDPFGSLRNWDSSDETPCGWTGVNCTSSEEPVVYSLDLSSKNLSGSLSSSIGKLIHLTYLNVSFNEFTGSIPKEIGDCIRLEYLILNNNKFNGQLPSELGRLTSLVKLNICNNGIHGSFPEEIGNLKSLVELVAYTNNITGPLPRSFGKLKGLRIFRAGQNAISGSLPAEIGQCENLETLGLAQNQLEGDLPKELGMLKNLTELILWENQISGILPKELGNCTSLTVLALYQNNLGGPIPKEFGNLISLMKLYIYRNALNGTIPAELGNLSLAIEVDFSENYLTGEIPKELSKIEGLQLLYLFQNQLTGIIPNELSSLSSLTKLDLSINNLTGPVPFGFQYMPSLSQLQLFDNSLSGSIPQGLGRNSPLWVVDFSDNLLTGRIPPHLCRHSNLIILNLESNKHYGNIPTGILNCKSLLQVRLVGNRFTGGFPSAFCKLVNLTAIDLDQNRFSGPLPPEIRNCQKLQRLHIANNYFTSHLPKEIGNLVQLATFNVSSNLFTGPIPPEIVNCKILQRLDLSNNFFENTLPKEIGSLLQLEILRVSDNKFSGSIPRELKNLSHLTELQMGGNSFSGSIPSELGSLKSLQISLNLSFNMLTGTIPLELGNLKLLEYLLLNNNSLTGEIPSSFADLSSLMGCNFSYNDLRGPIPSIPLFQNMPPSSFVGNKGLCGGPLGDCNGDNVSPSIPSFKSMNGPRGRIITGIAAAIGGVSIVLIGIILYCMKRPSKMMQNKETQSLDSDVYFPPKEGFTFQDLIEATNSFHESCVVGKGACGTVYKAVMSSGQIIAVKKLASNREGSNIDNSFRAEISTLGKIRHRNIVKLYGFCYHQVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPIDQGGDLVTWVKNSMRDHSMSSGMLDQRLNLQDQATVNHMLTVLKIALMCTSLSPFHRPSMREVVSLLLESTEPDEDHIPALTYNIAPNDAILQDQATVNHMLTVLKFALMCTSLSIFHRSRKLSLCFLKSSELDEDYISPLDMSENLNVIMWGRCLLPTQPTNTEFYCNKLYLSHPYRYRSNEKNQAIHRVFVMLTVTRAFWKIDPSIMIKSVKNNDINKDNIRKPFQSPPITVNITNALKDVNNQLTIHCKSGDDDLGVHQLSHLASYAFNFRPNFWGSTLGA* 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2361701 2390702 - Chy5G093110.1 Chy05g00265 226492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00265 1202 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 999 1039 - -
Chy05g00265 1202 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 875 996 - -
Chy05g00265 1202 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 874 - -
Chy05g00265 1202 SMART LRR_typ_2 388 412 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 292 316 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 580 603 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 244 267 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 340 363 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 148 172 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 100 124 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 364 387 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 484 508 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 604 628 IPR003591 -
Chy05g00265 1202 SMART LRR_typ_2 653 676 IPR003591 -
Chy05g00265 1202 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 999 1039 - -
Chy05g00265 1202 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 875 996 - -
Chy05g00265 1202 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 4 874 - -
Chy05g00265 1202 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Chy05g00265 1202 SUPERFAMILY L domain-like 394 715 - -
Chy05g00265 1202 Gene3D Ribonuclease Inhibitor 31 184 IPR032675 -
Chy05g00265 1202 Pfam Plant self-incompatibility protein S1 1151 1200 IPR010264 -
Chy05g00265 1202 Gene3D Transferase(Phosphotransferase) domain 1 875 1004 - -
Chy05g00265 1202 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Chy05g00265 1202 Gene3D Ribonuclease Inhibitor 284 383 IPR032675 -
Chy05g00265 1202 ProSiteProfiles Protein kinase domain profile. 806 1202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00265 1202 Pfam Protein kinase domain 807 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy05g00265 1202 Gene3D Ribonuclease Inhibitor 384 728 IPR032675 -
Chy05g00265 1202 SUPERFAMILY Protein kinase-like (PK-like) 793 991 IPR011009 -
Chy05g00265 1202 Pfam Leucine rich repeat 342 401 IPR001611 GO:0005515
Chy05g00265 1202 Pfam Protein tyrosine and serine/threonine kinase 879 985 IPR001245 GO:0004672|GO:0006468
Chy05g00265 1202 SUPERFAMILY L domain-like 33 329 - -
Chy05g00265 1202 Gene3D Phosphorylase Kinase; domain 1 767 874 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00265 - - - csv:101221337 1617.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00265 Chy-Chr5:2361701 Chy06g00401 Chy-Chr6:2718052 1.25E-48 dispersed
Chy05g00261 Chy-Chr5:2253653 Chy05g00265 Chy-Chr5:2361701 2.02E-163 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g839 . . . . . . . Bma05g01270 Cmo08g01010 Cmo17g00120 . . . . . . . . . . . . . . . . . . . . . Cone14ag0207 . . . . . Chy05g00265 . . . . . . . . . . . . . . Car08g00914 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001136 3 4 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 1 1 2 2 1 0 1 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71264 PF07714 PK_Tyr_Ser-Thr 4.60E-08 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00265 Chy_Chr05 FPKM 0.0 0.0 1.448389 0.76306 0.0 0.0 0.0 0.707861 0.844831 0.0