Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00280 ATGGCCGCAGAATCAATGCAGTCTATGTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGACCCAGAATTCGAACGTCTCGATTCACTCCCGTGGAACTCATCAATCCCTATCGATGACACTTTATCTGCATTCATTGGTTCCAATGATCTCGAAGGAGGATTTCTTTCCCTTGAGGAGATTGACGAAGCTGAGTATGGCATGGTGATTCCTGAACCTGACACAAGGAAACACAAATTGATACCAAAAGCCAGTGGAAATTCAAGGAAAGAGGAGCAAAACAATGCTGATTACTGTGAGGATGCATCAAGAGGTAGCAATGATAGTATTGACAAGGAAGCCGCTGGCCACAATGTTAATACGAAAACTAGCAAAAAAGGGAAAAAGGAGAAGAAGAAAAGGAAGAAAAAAAAGGTCATTCATGAAGTCCCAACGGCAGAGGAAGCTGTGGCTAGGGATATTGGTGGCAATGATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACGATGGCGATCATTTGGAGACGGAGAAGAAGCAACAAAAAAAAGAAAAAGAAACAAAGAACCATGGAATTGATAAAGAAATCAGGGATGAAGTTGAAAAGGATGCAGTTGATGAAACGGAATATTATGCATGGAATGAGTTGAGACTTCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAGCCTACAGCAATCCAGAAAGCGTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATTCTACAGCGATTCTTGGATGAACAAGAGAAATCTGGAAAGATGTCTGAAGAAGAAGGAGTAGATGCAAAAAAATATGCTCCCAAAAGTCTTCTACGGGCTTTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTATAGATATCAGGGTGGTTCCAATTGTTGGTGGAATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCCGAGGTTGTAGTTGGAACACCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAAAAGCATCTTGTAGAGTTGGAGGCATTGTCTTTCTTTGTGTTGGATGAGGCTGATAGGATGATAGAAAATGGACACTTTCGTGAGTTGCAGTCCATTATAGATATGCTTCCTGTGACAAATGGTTCTGCAGAAAATTTACAAAATGCAGAGAACTCTTTGATCACTCCAAGTTCTCAAAGAAAGAAAAGGCAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAACGTGTATCATCCAAACCTAACCAATTGGGAATGGATGGTTTGAATTCTATAGAAGCTCTATCTGAGAGAGCTGGAATAAGACCTAATGTTGCTGTTATAAATCTGACAAACGCATCAGTTTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACATTCTGTCTGTTTATGGACAAGGCCGCACTATTGTGTTTTGTACATCCATAGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGCGTTAATGTCTTGACTCTTCATGCTCAAAGACAGCAACGAGCACGCTTGAAGGCAATTGATCGCTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTCGATATTCCTGGTGTTCGAACGGTTGTCCACTATCAACTACCACATTCAGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCCGATGGTTGCAGTATCGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTGTGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAAATTGTGCGGAAGGAGTCCCAGGAGAAGGCAAGTAAAACTTGGTTTGAGCGGAATGCAGAGTTAGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGCAAACAATAATAAGCAGAAGAAAGTTGGCTGCATCCAGTTAAAGAAACTGCAGCAGGAGCTCGACAAGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACACCGATATTTGGCTGGTGCTGGGGTTTCACTTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGAACACTTCTGTTCAGACTATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGAATGCAAAAGAGATGGCTGAAAAACGGAGGAAAATGGAGAACGTCAAGAGAAAGAAAAAAGAGGAGAAAAAACGCTTGCGCGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2547 41.97 MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGMVIPEPDTRKHKLIPKASGNSRKEEQNNADYCEDASRGSNDSIDKEAAGHNVNTKTSKKGKKEKKKRKKKKVIHEVPTAEEAVARDIGGNDNDGIETEIGDEMDDGDHLETEKKQQKKEKETKNHGIDKEIRDEVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEQEKSGKMSEEEGVDAKKYAPKSLLRALIITPTRELALQVTDHLKAVAVGIDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELEALSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNAENSLITPSSQRKKRQTLVFSATLSLSSDFRKKLKRVSSKPNQLGMDGLNSIEALSERAGIRPNVAVINLTNASVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKIVRKESQEKASKTWFERNAELVELVVDNDDSEEERANNNKQKKVGCIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSLLLQHQFEELAKQNTSVQTMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMNAKEMAEKRRKMENVKRKKKEEKKRLRDQRRNKRKQMKGKI* 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2732586 2753667 + Chy5G093260.1 Chy05g00280 226507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00280 848 MobiDBLite consensus disorder prediction 1 35 - -
Chy05g00280 848 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 669 IPR001650 -
Chy05g00280 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 637 IPR027417 -
Chy05g00280 848 MobiDBLite consensus disorder prediction 72 199 - -
Chy05g00280 848 SMART ultradead3 235 474 IPR014001 -
Chy05g00280 848 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 464 IPR014001 -
Chy05g00280 848 Pfam Helicase conserved C-terminal domain 513 621 IPR001650 -
Chy05g00280 848 MobiDBLite consensus disorder prediction 801 848 - -
Chy05g00280 848 MobiDBLite consensus disorder prediction 125 142 - -
Chy05g00280 848 Gene3D - 176 467 IPR027417 -
Chy05g00280 848 Gene3D - 493 735 IPR027417 -
Chy05g00280 848 MobiDBLite consensus disorder prediction 819 848 - -
Chy05g00280 848 MobiDBLite consensus disorder prediction 72 89 - -
Chy05g00280 848 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 387 395 IPR000629 -
Chy05g00280 848 SMART helicmild6 541 622 IPR001650 -
Chy05g00280 848 Coils Coil 809 843 - -
Chy05g00280 848 PANTHER RNA HELICASE 111 770 - -
Chy05g00280 848 Pfam DEAD/DEAH box helicase 240 447 IPR011545 GO:0003676|GO:0005524
Chy05g00280 848 CDD DEADc_DDX24 227 490 - -
Chy05g00280 848 CDD SF2_C_DEAD 502 631 - -
Chy05g00280 848 MobiDBLite consensus disorder prediction 96 114 - -
Chy05g00280 848 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 216 244 IPR014014 GO:0003724
Chy05g00280 848 MobiDBLite consensus disorder prediction 176 199 - -
Chy05g00280 848 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 111 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00280 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - csv:101209958 1527.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00280 Chy-Chr5:2732586 Chy09g01411 Chy-Chr9:15776838 9.19E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00280 Chy_Chr05 FPKM 0.0 0.0 0.0 0.0 0.987515 0.0 0.74036 0.0 0.0 0.0