Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00292 ATGCAGGCTATGAAGGAGAAAGTCTCTGAGAGGTTCTCCAGCCTCTTCTCTAATTCCACCAGTTCCGAATCCTCCAAACCACCTCCCCCTGATCCTCGTACTCAGGCCAGGCCAAAATCGAAAGGAAGAAAATCTCTATCTTCATATTTATCCTTAATAATCCCTTCCATACATGGGTCTAAACCTTCTGCTTCTCGTCAAGACACTGATGCAGTTCAATCTCCCTCAGTTCGATATTGTGATGCAAACAATGATTTCCAGGAGGAAGGCTCAGATACTTCTTTAGGATGTAGTATACCATTCAAGACGGAAGAAATACCTAGAAATCAGGGTGAAAATAAGGATTGTGGTTCAGCATATGATGAGGAAAAACTGAATAAACTAAGAGATGAGTATGACTCGGCATGTAGAAAGAGCACTTGTAGTTCAGATGGGTTTGAAGAAGCTATGGAGCGACCCACTCCAAGAAACCCTTTATCAGACCTCATGGATGAGTCAGCTTTTATCACTTCACACTTGTATGAATTCCTTGGGTGTTGTCTTCCCAACATTGTGAAAGGGTGCAAATGGGTCTTGCTGTACAGTACGATGAAGCATGGTATATCTCTTCAAACTCTTATTCGCAACAGCCACAATCTTCCTGGCCCATGTTTACTGATTGTTGGAGATACTCGAGGTGCTATATTTGGTGGTCTTCTAGAATGCCCGTTGAAGCCTACAGCCAAAAGAAAATATCAAGGAACTCACCAGACATTTGTTTTTACAACGAAATATGGTGACCCAAGGCTTTTTCGAGCAACTGGAGCCAACCACTATTATTATATTTGTTTGAACGATTTACTGGCACTTGGAGGCGGTGGTAGCTTTGCCTTATGTTTGGATGGTGACTTATTAAGTGGAACTAGTGGACCGTGTGACACATTTGGTAGCTTATGCTTGGCGCATGACCCAGAGTTTGAGCTAAAAAATGTCGAGACGACCGGCATCCATTTCATTCAGATTCTCATTAACAATGCAGCCATTTATTACTTACACCACTTGCCAATAGCAGATGGACGGGTAAGAACTCTCTCCTCTCTTGATCATATTGAACTAATATCTGCTGTCTTTTATTTATTGATTCTGTTGTACTGTATGCATGCTAATAGAAATCCTGAACACAAATTAAGAAGAATGGACCCCCGCCCCCCCAATCAGGAAAAAGAGAGAGAAACAGGGGAGACAGTTGGATATGACAAGCTTGCAGTTATGGGAAAAGTAGCTGCAAGTTTGTCTGAATTAGAAACGATTGGTCGCTCCTTTAGAGGGAATTTTGTTGCCAAATGTGGCAAATGCTTGAAGATCTACTCATTAATAACAATATTAGAGCTTGGTTTCGAAGTTATGTTGCAGGACGTCATGAGCTCTGCGTCAGACCAAATGCTTTCCATTGATGAAATCTCTAGTCCGATCAATGCGCAAATATTTGATTTCTGTGACCCCGAGCTGTTCGCGGAGACGCTTCAGAATTCTGAGTTCAATTCTTGCTCAAATTGTTGTTACGACAAGAATTCGCCATATGCTACAAATCTGTCTAATTCCCCAGATCAAACAGATAACAATGGCAATGGCAATGGCAATAGCAATACTGTTGCCGGTGCTGCATCGTTTATACCTGCTAACGATGCATCAGCTGCAACTAACATAACGACCAACAGTGCTAGTAATCTGACTGCTATCTTTGATTCCCAAGAAGAACTTGACAACGATATCTCTGCTTCCATAGACTTCTCTCCATCGGCTTCGTTTTCGATCCCTCAATATCTCACTATCCAGTCGGGGCAGTTCGATGTTTCTCAATTGCAATCTCAAATGCCATTGGTAGATCCCATGATTGAAGGGCTTGTGCAGTGTCCTATGGCTCCAGTTGGAGCTCTCATTGACGAAGATCTACCGTCGATTTACGTCGATGATTGCTTATCTTCCTTGACTTCCTACATGCCACTGAATCCTGCTTCCCCTTCATGCTCGTTTGTCGGAACTACCATGGCAACTTACCTGCCTACTACAACAATGAATCCTGCTACATCGACTGTTGAAAGTTGTGGAATGTTTTCTCTCCTCGGCCATGAATTGCAAGACCTTGACTATCAAGGAGACAACTGTGGACTCTACAGCCAAGACTGTATGCAGGGGACTTTCAATCCAGCAGATCTTCAGGTGCTTAACAATGAAAATCTACAACTGGCTGCTGGGGCAATGAACTGCACTTCTTTAGCTTCCGATCTCTCAAGCTTAAAGGACAGTACTTTCAAAGTAGGAAAACTCTCCACGGAAGAGAGAAAGGAGAAGATTCATAGGTACATGAAGAAAAGAAATGAGAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGAAAAACACTAGCAGATAGCCGACCACGGGTTCGAGGACGGTTCGCAAAGAACGACGAATTGGCAGAGAATCACAGGGCTGCTTGTAGCAACCATGAAGGAGAAGAAGAAGAAGTAGTTGTGAAGGAAGAAGATAGCATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGAGTGAACTCCTTCAAGTGCAACTATCCAATTCAGTCTTGGACTTGA 2616 42.89 MQAMKEKVSERFSSLFSNSTSSESSKPPPPDPRTQARPKSKGRKSLSSYLSLIIPSIHGSKPSASRQDTDAVQSPSVRYCDANNDFQEEGSDTSLGCSIPFKTEEIPRNQGENKDCGSAYDEEKLNKLRDEYDSACRKSTCSSDGFEEAMERPTPRNPLSDLMDESAFITSHLYEFLGCCLPNIVKGCKWVLLYSTMKHGISLQTLIRNSHNLPGPCLLIVGDTRGAIFGGLLECPLKPTAKRKYQGTHQTFVFTTKYGDPRLFRATGANHYYYICLNDLLALGGGGSFALCLDGDLLSGTSGPCDTFGSLCLAHDPEFELKNVETTGIHFIQILINNAAIYYLHHLPIADGRVRTLSSLDHIELISAVFYLLILLYCMHANRNPEHKLRRMDPRPPNQEKERETGETVGYDKLAVMGKVAASLSELETIGRSFRGNFVAKCGKCLKIYSLITILELGFEVMLQDVMSSASDQMLSIDEISSPINAQIFDFCDPELFAETLQNSEFNSCSNCCYDKNSPYATNLSNSPDQTDNNGNGNGNSNTVAGAASFIPANDASAATNITTNSASNLTAIFDSQEELDNDISASIDFSPSASFSIPQYLTIQSGQFDVSQLQSQMPLVDPMIEGLVQCPMAPVGALIDEDLPSIYVDDCLSSLTSYMPLNPASPSCSFVGTTMATYLPTTTMNPATSTVESCGMFSLLGHELQDLDYQGDNCGLYSQDCMQGTFNPADLQVLNNENLQLAAGAMNCTSLASDLSSLKDSTFKVGKLSTEERKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDELAENHRAACSNHEGEEEEVVVKEEDSMVDSSDIFAHISGVNSFKCNYPIQSWT* 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2853735 2865564 + Chy5G093380.1 Chy05g00292 226519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00292 871 MobiDBLite consensus disorder prediction 41 75 - -
Chy05g00292 871 Pfam TLD 192 325 IPR006571 -
Chy05g00292 871 PANTHER CCT MOTIF FAMILY PROTEIN 477 871 - -
Chy05g00292 871 MobiDBLite consensus disorder prediction 387 406 - -
Chy05g00292 871 Pfam CCT motif 774 816 IPR010402 GO:0005515
Chy05g00292 871 MobiDBLite consensus disorder prediction 1 75 - -
Chy05g00292 871 SMART 109ultra 166 330 IPR006571 -
Chy05g00292 871 ProSiteProfiles TLDc domain profile. 167 330 IPR006571 -
Chy05g00292 871 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 477 871 - -
Chy05g00292 871 ProSiteProfiles CCT domain profile. 774 816 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00292 - - - csv:101214336 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00292 Chy-Chr5:2853735 Chy07g00904 Chy-Chr7:12877985 5.94E-52 dispersed
Chy01g02108 Chy-Chr1:25787143 Chy05g00292 Chy-Chr5:2853735 5.29E-06 transposed
Chy09g01246 Chy-Chr9:14518057 Chy05g00292 Chy-Chr5:2853735 3.95E-24 transposed
Chy09g01435 Chy-Chr9:15917484 Chy05g00292 Chy-Chr5:2853735 8.14E-14 transposed
Chy11g01258 Chy-Chr11:18727410 Chy05g00292 Chy-Chr5:2853735 2.12E-20 transposed
Chy12g00152 Chy-Chr12:1727019 Chy05g00292 Chy-Chr5:2853735 2.39E-18 transposed
Chy04g01890 Chy-Chr4:24991974 Chy05g00292 Chy-Chr5:2853735 8.16E-12 transposed
Chy05g00292 Chy-Chr5:2853735 Chy06g00435 Chy-Chr6:2932827 2.00E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g777 . . . . . . Bma04g01020 Bma05g01253 Cmo08g01031 Cmo17g00141 . . . . . . . . . . . . . . Cla06g00696 Cam06g0746 Cec06g0753 Cco06g0764 Clacu06g0737 Cmu06g0721 Cre06g1497 Cone14ag0177 Cone15ag0187 . . . Csa02g01029 Chy05g00292 . . . . . Bpe05g01109 . . . . . . Cma08g01061 Cma17g00142 Car08g00937 Car17g00124 Cpe12g00121 Cpe17g00215 Bhi12g01564 . . Lac12g2122 . . . . . . . . . . Lsi09g01197 . . Cme05g00617
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006098 0 4 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17980 PF07534 TLD 1.50E-26 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00292 Chy_Chr05 FPKM 9.180616 9.739816 5.761737 5.410247 8.244091 7.782468 9.168879 6.749922 7.191795 7.31694