Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00303 ATGGGGAATGATGTTAATGGCAGGCTGGGGAAGATGAAGGTGGCGGTGATCGGAGCAGGGATAAAGGGTCTGGTTTGTAGTTATGTTCTAGCCAAAGCTGGAGTAGAGGTGGTGCTGTTTGAGAAGGAAGAGTACTTGGGCAGCCATCATTATAGAACAATAAATTTCGATGGCTTTGATTTGGACCTTGGCATCATGGTCTTCAATCCAGCAACACATCCAAATACAGTGGCATTGTTGGAGGATTTAGAAGTTGAAATGGAAGAATCAAATATGTCATTCTCAATAAGTATAGACAAAGGAAGAGGCTATGAATGGGGCACTCGAAATGGTGTTTCAAGTCTTTTTGCTCAAAAGAACAATATTCTTGACCCTTCTTTTTGGCAAATGATTCGAGAAATAACCAAATTTAACCACGACGTTATCGAGTACACAATAAATTTATATGTTACAATTGCCTTAGTTGTTAACATAATAATTATTTTTCGTTATTTACCTAATTTGAAAGGAACAACATTGTTCATAGCTCCGTGCCTAGTTGAGCTTCCGATGTGTGGTTCCATTTGGTCGAACCCTATAGAAAAAGTTGTCAACTTTTCAGCCGTCTCAGTGTTTTCGTATCTTCAAGATCACTGTCTGCTTCAGTTATTTGGCCATCCACAATGGCTTACTGCCAAATCGACTTCGAATTCTTATCTGAAGAAGATACCAAAAATGATACCAAAAATGAATAATCTTGAAGAAAAAGGTCCTTTTTTCGTAACTATTAATCCAGAACAAGAGCCAAAAGACATCTTGTTTAAGTCCTCAATTGGCCATTCAATTCCATCTCTTAGTGCATTCAAAGCCTTGAATGAGCTCGATAGTATTCAAGGCAAGAGACAAATTTGGTTTTGTGGACCACATTTAGGTTCTGGCTCCCATGAAGATGGGTTAAAGGCTGGTACCATAGTAGCACAAAAAATTCTTGGAAAGAGTACTACTCTTTTGAGTAATAATCCAAACCATATGGTGCATTCTTTGGTAGAAACCGGAGCACGTTATCTAGTCACTAAATTTTTTGCACGATATATATCTATCGGATCCTTAACTATAAAGGAAGAAGGTGGTAGAATATTTACCTTTAAAGGAATAGATAACAAATTCCTTCCAAATGTTGTTTTGAAAGTTCACAACCCCAACTTTTATTGGAAGATTATGACAAGAGCTGATATAGGACTTGCAGATGCATATATTGATGCAGATTTTTCTTTTGTTGATAAGAATGAAGGTCTTCTTAATCTTATTCAGATTCTCATAGTCAATAAAGATGCAAACTCTTCGATTGCCAAATTAAATAAGAAAAGGTATTTGTGGCCATGA 1362 36.86 MGNDVNGRLGKMKVAVIGAGIKGLVCSYVLAKAGVEVVLFEKEEYLGSHHYRTINFDGFDLDLGIMVFNPATHPNTVALLEDLEVEMEESNMSFSISIDKGRGYEWGTRNGVSSLFAQKNNILDPSFWQMIREITKFNHDVIEYTINLYVTIALVVNIIIIFRYLPNLKGTTLFIAPCLVELPMCGSIWSNPIEKVVNFSAVSVFSYLQDHCLLQLFGHPQWLTAKSTSNSYLKKIPKMIPKMNNLEEKGPFFVTINPEQEPKDILFKSSIGHSIPSLSAFKALNELDSIQGKRQIWFCGPHLGSGSHEDGLKAGTIVAQKILGKSTTLLSNNPNHMVHSLVETGARYLVTKFFARYISIGSLTIKEEGGRIFTFKGIDNKFLPNVVLKVHNPNFYWKIMTRADIGLADAYIDADFSFVDKNEGLLNLIQILIVNKDANSSIAKLNKKRYLWP* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2944412 2963002 - Chy5G093490.1 Chy05g00303 226530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00303 453 PANTHER ARSENITE METHYLTRANSFERASE 244 452 IPR026669 -
Chy05g00303 453 PANTHER METHYLTRANSFERASE, PUTATIVE-RELATED 244 452 - -
Chy05g00303 453 PANTHER METHYLTRANSFERASE, PUTATIVE-RELATED 12 238 - -
Chy05g00303 453 Pfam NAD(P)-binding Rossmann-like domain 16 83 - -
Chy05g00303 453 Gene3D - 10 140 IPR036188 -
Chy05g00303 453 PANTHER ARSENITE METHYLTRANSFERASE 12 238 IPR026669 -
Chy05g00303 453 SUPERFAMILY Nucleotide-binding domain 11 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00303 K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] - csv:105434591 382.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00301 Chy-Chr5:2900972 Chy05g00303 Chy-Chr5:2944412 6.45E-75 dispersed
Chy05g00302 Chy-Chr5:2918194 Chy05g00303 Chy-Chr5:2944412 5.49E-74 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g758 Blo01g00298 . . . . . . Bma05g01249 . Cmo17g00148 . . . . . . . . . . . . . . Cla06g00686 Cam06g0737 Cec06g0744 Cco06g0754 Clacu06g0728 Cmu06g0712 Cre06g1487 . . . . . Csa02g01039 Chy05g00303 . . . . . . . . . . . . . Cma17g00149 . Car17g00131 Cpe12g00126 . Bhi12g01580 . . . . . . . . . . . . . Lsi09g01208 . . Cme05g00595
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000328 0 12 1 1 1 5 7 9 6 3 5 6 4 6 8 3 7 2 2 5 3 2 3 6 5 10 3 4 3 2 134
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00303 Chy_Chr05 FPKM 0.470803 0.547707 0.0 0.0 7.222095 6.649156 8.309562 0.0 0.0 0.0