Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00312 ATGAAGTCTTCCACTGTGCTTGATTCGGCTACTTTTCAGCTCACACCTACTCGAACCAGGTGTGATTTGATTATATCTGCAAATGGAAAGTCTGAGAAGATAGCTTCGGGTTTATTGAATCCTTTTCTTGCTCATTTGAAGATTGCACAAGAACAGATGGCCAGAGGTGGTTATTCCATCATTCTCGAGCCAGACTCTCGCAGTGATAGTACATGGTTCACAAAGGGTACCATGGAGAGGTTTGTTCGATTTGTATGCACCCCTCAAATCTTGGAACGGGTGTACACTATTGAATCAGAGATCTTACAGATTGAGGAAGCAATTGTGATTCAGGGCAACAATGATACGAGGCCAAATGTTGTGGATGACAAGCAAGGAAAGCCTACAAAGTCTCCCGAAAGCACCACCGAAGGTTCTAAAACCAATGGAGCAAGCAAGTCTCTTCTGGATGGTAACGAGGAGAAAGCAATTGTTTTGTACAAGCCAGATGCAAACTCACTGGAGGCCAATGGATATATGGTGTCAGAGGAGAACTCAAAAGCTCAGCTTCTTAAAGTACTTGAGACACGCAAAACTATGCTGCAAAAGGAGCAAGGAATGGCTTTTGCTCGAGCTGTTGCTGCTGGTTTTGACATTGATCGGATGCCACCATTGATATCGTTTGCAAACAGCTTTGGAGCCTCACGGTTGATGGATGCATGCTTAAAATTCAAAGAACTATGGAAAAGAAAGCATGAAAGTGGCCAATGGCTTGAAATTGAAGCAGCAGAAGCGCTGTCCAGCCGGCCAGACTTTTCCCCTTCTGTGAATACGTCAGGCATTATACTTACAAGTTTGACTGACAAACAGACAGAATCTAGAGAAACATGGTCTGAATCTCAAAACGAATCATCTTCAACAAATAAGGGGAATGCAATTGCAGATGGTAATACACCTATGATGTACCAGTCACCACCAGGCCACCAAGAGTATCTTCAAGGACAGTATCCTCCTCATATGTACCCTCCATGGCCCATCAATTCTCCTCCAGGTGCATTACCTGTCTTTCAAGGATACCCCATGCAAGGAATGCCTTACTATCAGAACTATGCAGGTGGCAGCCCTTACTTTCATCCACATTATCCAGTAACAGAGGATCCTCGTTTGGGCGATGGTAGAAGAATGGGAGGCAAAAGGCACTCCATGGATGGTGGAGATAACTCAACTGAACCAGAAACCTGGGAGACAAATGCTTCAAAGGCAAGAGTACCTGATGATGCTGAATCAGAGGAAGAGGCGTCAGAAGATCAGAGAAAATCTGGTTGCTCAGGTAAAAAGAAATCAGGTGTGGTTGTCATCCGCAACATCAACTACATTGCTTCGAAGCGGCACAACTCATCAGGCAGTGAAACAGATTCACCTTCTGAGAGTGGTAGTGAGGAAGATAGAGATTTGCAGGCTCTTAGTTTAGAAATTAAACACAAGAAATCCACTAGATCATCAAGAAGCAAAGGAAAACATCTAAATTTTGGAGATCAATCAAATACTCCAGCGAAAACTGTTTCACCAGAAGCAGATGGACATTGGCAGGCATTCCAAAGCCTTTTACTTCGAGATGCTGATGCAGATAAACATCATGCTGATCAAAGCCTGTTTACTTTGGAGCGTGATACCAAGCAGAAAAGGCGACAAAATAAAGTTGGTGATGATCCACTAATTGCTCAGGGATCAAACAGAGATGAAATCCAAGAAAATGGTGCTACAGACATTGATAGAATTGGTGGAAGAATCAACCGTGTGTCAAGGGCATCAAATGATGAATTATTAACTTCTCGAAGAGATGGTATATCTGGGGATGGTCATTTGAATGTGCAGACTATAGAACTAGACGGAGGAAGAAATGGCTACAGGAGGCCTGGTAGTGATGATTTTATGGTTTATGGTCAAAAGGGTCAAACTCTCTCTAACGCTCACTTAGATCCATTAGCTGTAAGTGGCTTTGATATTAGAAAAACAAACTATGATAAAAATTCTTCAAATAATTTGGATGGTGATTCTTACATAGTTCCATTAAGATCGATGTCAATGGATGCAGTTGGAAAGGAAGGTAGAACTGCTGTTGACATGGATTCTGAGTTTCCATCTTCAAATCATAAGGCAGAAAATTTGTCCAATAGAGTTGCTACCTACGAGCCAGATGTACTGAATCTGATGCCAAAACGTGAAACGGAAAATGAACCTGCTGGTTATGATCCTGCTTTAGAATATGAAATGCAGGTTAATGCTGGACGCATGCCAGCAGTGGCTAAGAAGAAGGAAGTGGTAACTGATATTAAAAAAGGAGTTAAAAGGTTGGACACTGATCGTAAGCCAAAAATCACTCCAGATAGGAAAGCTGGGGGGCCAATAAGGAAGGGAAAACCTTCTAAGTTGAGTCCTCTAGATGAAGCTCGAGCACGTGCTGAAAAGCTAAGAACTTATAAAGCTGATCTCCAGAAATTGAAGAAGGAGAAGGAGGAGGAAGCAATAAAAAGAATAGAGGCTTTGAAGCTAGAGAGGCAGAAGAGAATTGCAGCAAGGGGTAATAATAGCAACTCTGCTCAGTCGTCATTGCCTTCTCAGCAAACTAGAAAGCTCCTGCCAACAAAAATGTCACCCAACTCTCAGAAAGGATCAAAATTTAGTGATTCAGATCCAGGACCATCATCTCCTCTGCAAAGGTTCCCCATCAGAACGCCTTCAATTGGTTCCAACGATTCCAACAAAGTTGCAAAACCCAGCAGATTGAACGATGGAAATCACTCAGCTGGAAACCGGTTAATTCAATCTGTACCTTCATTAACTAAACTAAAGAAAGAGAACAGTGATGCCACAAATGACAAAAAAGTATCCATGGCTCGTATCAGAAGATTATCAGAGCCAAAAATGAGTATCAGCAATCATTCTTCTTCTACCAAGACACGAAGCACTGAGCCAGCTATAAAGGCAAAAGTAACTAATGAGACTGAGAGCAAAAAGAAGATATCCGCTATAATGAATTTGGATAAGAGCAAGGCTGCAACTCTTCCAGAACTTAAAATTAGGACGACCAAGGGACCTGGTGCTACAATTGGCAACTCAATAGCTCAAGAAACAATGCAGAGTTTGAATTATCCATCAGTTTCTGAGGGTGCTTGTGCTTCCATGGAAAGGATTACTGCCAAAGTCACACATCATAATGAACTGGATGACAACCCTGTTGAAAAGACTGTTGTAATGCTTGAATGTGAGAAGCCCTCCATCCCTACAGTTCCTGCTTCTAAAGACAATCTTAATCCCCAAATTAAAGTGTCCGGTGTCAATAGAGAACCCATCAAGCACCAACCACAGAGTCAGTTGAGTTCTCATGAGGTGACAGCGGATGGTGCATCAGATCAGGACGCACAAAAGTTTTCATCTCCTAGTACGACTGAAAAATCATATAAAGCTCCACACGCACGTGTTTCTTCTTTTGAAGATCCTTGCACACGCGTTTCAGAGTATGGAAAGGCAATCCCATCAGATTTGGAGAGTGCAGCAAAAGGCTCTGGAACGACAAAAGCTTATGTTCCTGATTATGGAGACGCACAATTGGAAAAGATTCCTGAAGCACTGGAGAAGCCTGAGGTAAAAAAATCATCAAAAGGACTTAGACTGCTACTGAAGTTTGGAAGAAAGAATCAAAGCCCAACCACAGACGAGCATAATGATGAATCAGATAATATCAGCACAAATGATTCTGAAGCCAATGATGTTGGGACTAATACCACTTCTCACAGTGAAGTTCCTACGCTGAAAAATCTGATATCTCAAGACGAAACCCCCACCGCTAGCAAAACTCAAAAGTCCTCTCGTGCATTTTCCCTGCTATCACCTTTCCGAAAGGAGAGACTGGAGACCATGTTATTCTCGAATGTGCTCATTCAATCACCGAACAGAGGGACGGGCATCAAGTCTGAAACAGAGTGGCTAAGCATAAAGATCTTATCATGCTCGTCTTCTTCCTCTCTCTCCCATTCTGTGGATGAGATTATGTTAAACGTCTATCCAACAGGATCTTTCAAAGCGGAAGATTTAAAAGTTCTTGGGAGTTCATATCTTACCTCCCATATGCCATGGCTTCCCAATATTACAAATTCAGTTTCCGAGTTGACTCTTTTCGTTGCAAGCACAAGTTCAGAGCTTTTCCGAGGCTTCATTCCTACAAAGAAACCACAATAA 4218 42.32 MKSSTVLDSATFQLTPTRTRCDLIISANGKSEKIASGLLNPFLAHLKIAQEQMARGGYSIILEPDSRSDSTWFTKGTMERFVRFVCTPQILERVYTIESEILQIEEAIVIQGNNDTRPNVVDDKQGKPTKSPESTTEGSKTNGASKSLLDGNEEKAIVLYKPDANSLEANGYMVSEENSKAQLLKVLETRKTMLQKEQGMAFARAVAAGFDIDRMPPLISFANSFGASRLMDACLKFKELWKRKHESGQWLEIEAAEALSSRPDFSPSVNTSGIILTSLTDKQTESRETWSESQNESSSTNKGNAIADGNTPMMYQSPPGHQEYLQGQYPPHMYPPWPINSPPGALPVFQGYPMQGMPYYQNYAGGSPYFHPHYPVTEDPRLGDGRRMGGKRHSMDGGDNSTEPETWETNASKARVPDDAESEEEASEDQRKSGCSGKKKSGVVVIRNINYIASKRHNSSGSETDSPSESGSEEDRDLQALSLEIKHKKSTRSSRSKGKHLNFGDQSNTPAKTVSPEADGHWQAFQSLLLRDADADKHHADQSLFTLERDTKQKRRQNKVGDDPLIAQGSNRDEIQENGATDIDRIGGRINRVSRASNDELLTSRRDGISGDGHLNVQTIELDGGRNGYRRPGSDDFMVYGQKGQTLSNAHLDPLAVSGFDIRKTNYDKNSSNNLDGDSYIVPLRSMSMDAVGKEGRTAVDMDSEFPSSNHKAENLSNRVATYEPDVLNLMPKRETENEPAGYDPALEYEMQVNAGRMPAVAKKKEVVTDIKKGVKRLDTDRKPKITPDRKAGGPIRKGKPSKLSPLDEARARAEKLRTYKADLQKLKKEKEEEAIKRIEALKLERQKRIAARGNNSNSAQSSLPSQQTRKLLPTKMSPNSQKGSKFSDSDPGPSSPLQRFPIRTPSIGSNDSNKVAKPSRLNDGNHSAGNRLIQSVPSLTKLKKENSDATNDKKVSMARIRRLSEPKMSISNHSSSTKTRSTEPAIKAKVTNETESKKKISAIMNLDKSKAATLPELKIRTTKGPGATIGNSIAQETMQSLNYPSVSEGACASMERITAKVTHHNELDDNPVEKTVVMLECEKPSIPTVPASKDNLNPQIKVSGVNREPIKHQPQSQLSSHEVTADGASDQDAQKFSSPSTTEKSYKAPHARVSSFEDPCTRVSEYGKAIPSDLESAAKGSGTTKAYVPDYGDAQLEKIPEALEKPEVKKSSKGLRLLLKFGRKNQSPTTDEHNDESDNISTNDSEANDVGTNTTSHSEVPTLKNLISQDETPTASKTQKSSRAFSLLSPFRKERLETMLFSNVLIQSPNRGTGIKSETEWLSIKILSCSSSSSLSHSVDEIMLNVYPTGSFKAEDLKVLGSSYLTSHMPWLPNITNSVSELTLFVASTSSELFRGFIPTKKPQ* 1406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3095301 3105339 - Chy5G093580.1 Chy05g00312 226539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00312 1405 MobiDBLite consensus disorder prediction 1227 1241 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 851 945 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 1222 1282 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 452 467 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 469 489 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 374 439 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 1110 1149 - -
Chy05g00312 1405 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1295 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 451 520 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 774 809 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 131 147 - -
Chy05g00312 1405 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1 1295 - -
Chy05g00312 1405 Coils Coil 807 847 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 851 954 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 278 323 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 543 561 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 1107 1159 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 543 571 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 500 514 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 412 436 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 278 327 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 377 399 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 1242 1282 - -
Chy05g00312 1405 MobiDBLite consensus disorder prediction 115 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00312 - - - csv:101205835 2414.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00312 Chy-Chr5:3095301 Chy07g00094 Chy-Chr7:840950 9.02E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00312 Chy_Chr05 FPKM 27.286354 27.141125 19.089691 19.820534 21.68479 23.040646 22.185917 80.974014 77.581276 71.184662