Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00330 ATGAATTCTTCATTCTTTCACTCCCAAAACTCCGATCTCTCACCCGAGTCTTCCTTTAGCTCCTTTGAATCCCTCCGATGGGAAGGTTTTCAAATCAACGATCACTCTCTCCCCTTCAACCAGAATGATTCCGGCGAAATGCTTCTTCACAGCTTAATCTCCGAGGCTTATATGGACCCACCGGAAAATTCCCCTCGGCAGGATCCGATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGACCCCCACAAGAGAAAGTCCTACAGAGGGGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCAACCCGAAATGGGGTCAGGGTTTGGCTCGGGACATTCGACAGTGCCGAGGCGGCCGCTTTGGCCTACGATCAGGCAGCTTTTTCGATGAGAGGTTCCGCCGCCGTTCTTAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTGAAGGAGATGGAGATGATCAACTCCGCGGGTGAGGGCGGGGACGGTGGATCTCCGGTGGTGGCTTTGAAGAGGAAACATTCGATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGATAGATAGGATTGGGAAGACTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTTTAGAGTCATCCGAGAATCTCCGACCGTGGTAG 687 50.95 MNSSFFHSQNSDLSPESSFSSFESLRWEGFQINDHSLPFNQNDSGEMLLHSLISEAYMDPPENSPRQDPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAGEGGDGGSPVVALKRKHSMRKKFTRRKSKEIDRIGKTENNVVVLEDLGSDYLEELLESSENLRPW* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3350035 3350721 - Chy5G093760.1 Chy05g00330 226557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00330 228 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Chy05g00330 228 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Chy05g00330 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 31 221 - -
Chy05g00330 228 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Chy05g00330 228 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Chy05g00330 228 MobiDBLite consensus disorder prediction 56 92 - -
Chy05g00330 228 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Chy05g00330 228 PANTHER DNA-BINDING DOMAIN 31 221 IPR044808 GO:0003700|GO:0009873
Chy05g00330 228 MobiDBLite consensus disorder prediction 65 87 - -
Chy05g00330 228 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Chy05g00330 228 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Chy05g00330 228 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00330 Chy-Chr5:3350035 Chy09g01053 Chy-Chr9:12974431 3.61E-29 dispersed
Chy04g01070 Chy-Chr4:16050519 Chy05g00330 Chy-Chr5:3350035 3.80E-53 wgd
Chy05g00330 Chy-Chr5:3350035 Chy06g00479 Chy-Chr6:3204245 1.25E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17983 PF00847 AP2 8.80E-15 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00330 K14516 - csv:101206564 407.912