Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00336 ATGAACACCCCTTTACCAGTTTTCAATTCTTACGACCGCCAGGCCGATCTCGAAGCTTTCCACAATACCAAATTGGGAGTGAAAGGTTTGGCGGATGCCAGAGTTTCCCAACTCCCAAGAATCTTCTGCCACGACAATCAATCGGCGGCGTCCCTAATCTCTTCCCCTGCAGCTGCGGCGGAGGAGAAATTAGCGGGCAAAACAGACGCCAAGAATTTAACAATCCCTGTTATCGATCTACAAGATTCTCACAAAAACAGAGTAAAAATAATAAACGAAATCAAAGACGCTTGCAAGAATTGGGGATTCTTTCAAATCCTCAACCATGGGGTTCCATTAAGCGTAATGAAGGAGATGATGGACGGAATCCGGCGGTTTCACGAGCAAGAAGAGGAAATGAAGAAGGATCTGTACTCGAGAGATTTCCAGAGGAAGATACTTTTCAATACGAATTTCGATTTGTTCAAAGGGGTGTCGACGAATTGGAGGGACTCGTTGACGGTGGTGGTGGCACCGCGTGGGGTGGAGGCGGAGGAGATACCGGAAGTATCGAGGGAGGCGATAGTGGAATATTCGAGAAGGGTGAAGGAATTGGGGGATATTTTACTTGAATATTTAGGGGAGGGATTAGGAGTGGGGAGGGATAGGTTGAAGGAATTGGGGTGTGGAGATGGAATGGTAATGTTCTGTCATTACTATCCGCCGTGTCCACAGCCGGAAATGACATGGGGAACCACAGATCATACAGATGGTAGTTTCCTGACGGTGCTTTTGCAGGATGATTTGGGTGGACTTCAAGTCCGCCATGAGGATCGCTGGGTTGATGTTCATCCCATCGAAGGAGCTTTTGTTGTTAACATGGGCGATTTCATGCAGATGATGTCAAATGATACGTTCCTAAGTGTGCATCATAGGGTTTTAGCAAATAAGAAAGGGCCAAGAATATCAGTGGCAAGTTTCTTTAGGTGCAATCTTGCACCAGAAAATGGTTTAGTTTTTGGACCTCTTAAGGAGTTAAGATCAGAGGAAAATCCAGACATATATAGAGAAACTTCCATCAAAGACTATGTTGCTCATTACTATAACAAAGGCCTCAATGGCATCTCTGCTCTTGAACACTTCAAACTTTGA 1131 45.27 MNTPLPVFNSYDRQADLEAFHNTKLGVKGLADARVSQLPRIFCHDNQSAASLISSPAAAAEEKLAGKTDAKNLTIPVIDLQDSHKNRVKIINEIKDACKNWGFFQILNHGVPLSVMKEMMDGIRRFHEQEEEMKKDLYSRDFQRKILFNTNFDLFKGVSTNWRDSLTVVVAPRGVEAEEIPEVSREAIVEYSRRVKELGDILLEYLGEGLGVGRDRLKELGCGDGMVMFCHYYPPCPQPEMTWGTTDHTDGSFLTVLLQDDLGGLQVRHEDRWVDVHPIEGAFVVNMGDFMQMMSNDTFLSVHHRVLANKKGPRISVASFFRCNLAPENGLVFGPLKELRSEENPDIYRETSIKDYVAHYYNKGLNGISALEHFKL* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3460704 3463122 - Chy5G093820.1 Chy05g00336 226563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00336 376 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 325 IPR005123 -
Chy05g00336 376 Gene3D - 17 359 IPR027443 -
Chy05g00336 376 SUPERFAMILY Clavaminate synthase-like 24 366 - -
Chy05g00336 376 Pfam 2OG-Fe(II) oxygenase superfamily 227 321 IPR044861 -
Chy05g00336 376 Pfam non-haem dioxygenase in morphine synthesis N-terminal 75 167 IPR026992 -
Chy05g00336 376 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 375 - -
Chy05g00336 376 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE HOMOLOG 1-LIKE 7 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00336 - - - csv:101220285 721.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01660 Chy-Chr4:23004261 Chy05g00336 Chy-Chr5:3460704 1.10E-48 dispersed
Chy05g00336 Chy-Chr5:3460704 Chy07g00813 Chy-Chr7:10214380 3.45E-57 dispersed
Chy05g00336 Chy-Chr5:3460704 Chy10g00419 Chy-Chr10:9977910 4.35E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g668 . . . . . . . Bma05g01073 Cmo08g01066 . . . Car06g01145 . . . . . . . . . . . . . . . . . . . . . . . Csa02g01076 Chy05g00336 Cme06g00508 . . . . Bpe05g00863 Bpe13g00564 . . . Cmo06g01338 . Cma08g01091 . Car08g00966 . . . . . . . . . . . . . . . . . Lsi09g01246 Csa03g01223 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00336 Chy_Chr05 FPKM 28.292953 28.964048 30.69235 27.825691 28.469156 32.199654 28.401247 29.948631 28.966652 31.642426