Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00341 ATGATTGATGAGGACTTCAGTTCGTCACTGTTTGCTGTTGAGAGTCCGGCGGGGTTTCCTACCACCGTCGACGCCAGTGGAAGAGATAAAGATGAGGAAGAAGATGAGCCAAAGGGTGGCGGTGTGGAGGTCGGAAACCGCCGATCGAGAGGGCGGCCACCGGGATCAAAAAACAAACCAAAATCTCCAATCATCGTCACGCGCGACAGCCCTCACACGCTTAGCACCCACGTGATAGAGATCGTGGGAGGAGCCGACGTCGCGGACAGCATAAACCAATTCTGCTGCCGACGGCAACGTGGAGTTTGTGTTCTCAGTGGCAGCGGTACGGTTGTGGACGTAACTGTCAGGCAATCGGCGGGTTCCGGCGCAGTGATCCAACTTCGTGGCCGGTTCGAGATTTTGTCTGTGAGTGGGTCTTTTCTTCCCGGTCGAGACCCTCCCGGTTCAACCGGGTTGACCGTATACTTGGCTGGCGGCCAGGGGCAGGTGATTGGAGGGACGGTAGTTGGTCCACTATTGGCGGGTGGGCCTGTAATATTGATCGCTGCTACCTTTGCTAATGCAACTTATGAGAGACTTCCTTTACAACACCATCCTAATTATGAAGAAAGAGAGGTTTCTCCAGCCACCACGAGTGCCGGAGAACTGGAGGAGCCCCCGCCGTATCCTCGGATCGCAACTTCAATTTACGACTTGATTGCCCCAAATAATAATAATCATGCACTCGATGGCTATGCTTGGACTCATGACAGACCATCTCTTGTTTAA 771 53.44 MIDEDFSSSLFAVESPAGFPTTVDASGRDKDEEEDEPKGGGVEVGNRRSRGRPPGSKNKPKSPIIVTRDSPHTLSTHVIEIVGGADVADSINQFCCRRQRGVCVLSGSGTVVDVTVRQSAGSGAVIQLRGRFEILSVSGSFLPGRDPPGSTGLTVYLAGGQGQVIGGTVVGPLLAGGPVILIAATFANATYERLPLQHHPNYEEREVSPATTSAGELEEPPPYPRIATSIYDLIAPNNNNHALDGYAWTHDRPSLV* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3529987 3536650 + Chy5G093870.1 Chy05g00341 226568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00341 256 CDD DUF296 76 186 IPR005175 -
Chy05g00341 256 Gene3D - 75 207 - -
Chy05g00341 256 MobiDBLite consensus disorder prediction 1 68 - -
Chy05g00341 256 MobiDBLite consensus disorder prediction 25 45 - -
Chy05g00341 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 73 198 - -
Chy05g00341 256 MobiDBLite consensus disorder prediction 200 221 - -
Chy05g00341 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 253 IPR014476 GO:0003680
Chy05g00341 256 ProSiteProfiles PPC domain profile profile. 71 210 IPR005175 -
Chy05g00341 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 187 IPR005175 -
Chy05g00341 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 27 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00211 Chy-Chr4:1926956 Chy05g00341 Chy-Chr5:3529987 4.34E-41 dispersed
Chy05g00341 Chy-Chr5:3529987 Chy06g00280 Chy-Chr6:1884621 1.58E-67 dispersed
Chy05g00341 Chy-Chr5:3529987 Chy06g00491 Chy-Chr6:3305545 9.04E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00341 - - csv:101221494 436.032