Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00378 ATGGAAGGAAAGCCCCAAAAACTGATCCAAATCCCCAGAGTAAAACTGGGTAGCCAAGGATTAGAGGTATCAAGGTTGGGGTTTGGGTGTGCAGGACTTTCAGGATCTCTCAACAGTCCCCTTTCTCATGAAGAGGGATGTAAAATAATCAAACAAGCTTTCATCAGAGGCATAACTTTTTTTGATTCTTCTGATATTTATGGAGCCGATCATGACAATGAAATCATGATTGGAAAGGCCTTGAAACAGCTTCCCCGAGAGAAGATACAGTTAGCTACAAAGTTTGGGATTGTACCATTAGGAGGACTTGAATTTGCAGTTAATGGGACACCTGAATATGTAAGGAAGTGCTGTGAAGCAAGTCTCGAGCGCCTTCAAGTTGATTATATCGACCTCTACTATCAGCATCGTATTGACATATCTGTGCCAATCGAAGAAACTATGGGAGAGCTAAAGACGCTGGTGGAAGAGGGAAAGATAAAGTACATCGGGTTGTCTGAAGCAAGTGCAAACACAATTAGGAGAGCTCATGCAGTCCATCCAATCACTGTCATTCAAATGGAGTATTCGCTGTGGAGTCGTGATATCGAAGATGACATAATTCCACTTTGTAGGGAGCTGGGAATTGGGATAGTGGCTTACAGTCCTCTGGGTCGAGGGTTCTTTGGGGGAAAGGCAACTGCAGAGAGCTTGCCAAGTGAGACCTCATTGGCTTACCATCCAAGGTTCAGCAAGGAGTGTTTAGAACAGAATGAAGCTGTTTACAGAAGGTTTGCAAGTGTAGCTGTGAAGCATGGTTATACCACAGTTCAGTTGGCTTTAGCTTGGCTGCTCCACCAGGGTATTGATATTGTTCCCATCCCAGGTACAACCAAACTTGGAAACCTTGATAGCAATATTGAGTCATTGGATGTGAAGCTAACAGAGGAAGATTTCAAAGAAATTGGTGATGCTGTCCCAGTCGATGAAGTTAGAGGCCAGCGAGAATATGATTTTGCAGTGAATGGGACACCTGAATATGCAAGGAACTGCTGTGAAGCGAGTCTTCAGCAGCTTCAAGTTGATCACATTGATCTCTATTATCAAAGCATCATCGACCTATCTATGCCAATTGAGGAAACTGTGAGTCATTTCTTCCATTGA 1143 43.48 MEGKPQKLIQIPRVKLGSQGLEVSRLGFGCAGLSGSLNSPLSHEEGCKIIKQAFIRGITFFDSSDIYGADHDNEIMIGKALKQLPREKIQLATKFGIVPLGGLEFAVNGTPEYVRKCCEASLERLQVDYIDLYYQHRIDISVPIEETMGELKTLVEEGKIKYIGLSEASANTIRRAHAVHPITVIQMEYSLWSRDIEDDIIPLCRELGIGIVAYSPLGRGFFGGKATAESLPSETSLAYHPRFSKECLEQNEAVYRRFASVAVKHGYTTVQLALAWLLHQGIDIVPIPGTTKLGNLDSNIESLDVKLTEEDFKEIGDAVPVDEVRGQREYDFAVNGTPEYARNCCEASLQQLQVDHIDLYYQSIIDLSMPIEETVSHFFH* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4106463 4110528 + Chy5G094240.1 Chy05g00378 226605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00378 380 SUPERFAMILY NAD(P)-linked oxidoreductase 333 378 IPR036812 -
Chy05g00378 380 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 6 331 - -
Chy05g00378 380 SUPERFAMILY NAD(P)-linked oxidoreductase 13 318 IPR036812 -
Chy05g00378 380 PANTHER ALDO-KETO REDUCTASE 4-RELATED 331 376 - -
Chy05g00378 380 Gene3D - 11 330 IPR036812 -
Chy05g00378 380 Gene3D - 331 379 IPR036812 -
Chy05g00378 380 PANTHER ALDO-KETO REDUCTASE 4-RELATED 6 331 - -
Chy05g00378 380 Pfam Aldo/keto reductase family 331 377 IPR023210 -
Chy05g00378 380 Pfam Aldo/keto reductase family 26 315 IPR023210 -
Chy05g00378 380 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 331 376 - -
Chy05g00378 380 CDD AKR_AKR13D1 12 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00378 - - - qsu:112016410 510.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00187 Chy-Chr1:1270751 Chy05g00378 Chy-Chr5:4106463 5.42E-28 dispersed
Chy05g00378 Chy-Chr5:4106463 Chy10g00014 Chy-Chr10:361143 1.69E-12 dispersed
Chy05g00378 Chy-Chr5:4106463 Chy05g00379 Chy-Chr5:4110595 1.28E-43 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g561 . . . . . . . . . Cmo17g00198 . . . . . . . . . . . . . . Cla06g00614 Cam06g0652 Cec06g0655 Cco06g0659 Clacu06g0640 Cmu06g0634 Cre06g1401 . . . . . Csa02g01121 Chy05g00378 . . . . . . . . . Sed09g0732 . . . Cma17g00206 . Car17g00181 Cpe12g00174 . Bhi12g02241 Tan06g2480 Cmetu05g1903 . . . Lcy13g0314 . . . . . . . Lsi09g01291 . . Cme05g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001019 1 1 1 3 1 3 1 3 3 2 2 3 4 2 3 1 3 2 2 3 2 4 3 2 3 2 2 3 9 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00378 Chy_Chr05 FPKM 1.410112 0.0 2.997856 2.526081 1.099564 1.623963 1.293933 3.941726 4.302133 6.371522