Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00381 ATGAGTGCCGGTGCGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCTTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTTAAAGCATTGCTTGAGCCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGATAAATTCAAATCAAGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACAATGTCAGTTGATGAATCTGCTTATAGCAACGTGGAGACTGCGAAATCTACTCCTGAGGATCCCCCGGTTGAACCAGAGAACAATGTTACTAGTCCCAGAGATCAATACGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTCCCACCAGATAAGGCGTGGGCAATCATGCATCTTGCAGCTAGTCCAGTTCATTTCCCTCAGAATCATCCCATGAGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTTCCAGTGACAGAGATGACTTTCTTCCTCCTAGTGCTACCATCTATCGAAATGTGCACACAGAGAAGTTGGGCGAGCACCCTCAGCAGCAGCAGCATGCAAAGGGGACCAGTATGCGGGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAGGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGGCTTCTCCTAGCCTGGAGGGATATATGAACCATCAAATGACGACGCACATATCCAATAAGAATTTAGGTCAAATTGTGACGAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTCGGACCAGCTGACAATCAGCCAAAACTTGCATGTTTTTCTGTCGACCTTAATGTCAAAGGAGCGTTGTGTAGACCTTCACGAACCAGTCATATTTTGGAGATCTTGCGTGGGAGAGGTGTCTATATCCAAACGGCTTGGTTTATGGACGATAGCAATGAAGACCAGAGGCTTCCTCATCACCCAAACCCTAAAGAATTCGTCTCCATGAACCAATTGGCAGAATTAGGCGTTTTGTATTGGAAATTGAACCCTGAGATATATGAAAAAGATGAGGAATTGAAGAAAATCAGAGACAATAGAGGATATAACTACGTGGATTTACTTGATATATCTCCAGAGAAACTTGCCAATTACGAAGGGAAATTGAAGGATTTCTACACAGAACACATTCATGCTGATGAGGAAATTCGTTACTGTTTGGATGGAAGTGGCTACTTTGATGTACGGGACAAGAACGACCGTTGGATTCGAATCTGGATTAAGCCCGGCGATCTCATCATCTTGCCGGCTGGTATCTACCATCGTTTTACTCTGGACACCAATAATTATACCAAGTTAATGAGGCTATTCAAGGGAGAGCCAGTTTGGACCCCTTTTAACCGACCACAGGAGCAGCACCCAGCAAGGAAAGAGTACCTCAAGTCCTTCACTGAGAAAGCTGGAGTGGCACTCAAGGCTCATTAA 1620 45.74 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRINSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPVEPENNVTSPRDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPVHFPQNHPMSGTAACQSPPCLLQTSSDRDDFLPPSATIYRNVHTEKLGEHPQQQQHAKGTSMRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLASPSLEGYMNHQMTTHISNKNLGQIVTSSLSPTGVAKAFVGPADNQPKLACFSVDLNVKGALCRPSRTSHILEILRGRGVYIQTAWFMDDSNEDQRLPHHPNPKEFVSMNQLAELGVLYWKLNPEIYEKDEELKKIRDNRGYNYVDLLDISPEKLANYEGKLKDFYTEHIHADEEIRYCLDGSGYFDVRDKNDRWIRIWIKPGDLIILPAGIYHRFTLDTNNYTKLMRLFKGEPVWTPFNRPQEQHPARKEYLKSFTEKAGVALKAH* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4113914 4120822 - Chy5G094270.1 Chy05g00381 226608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00381 539 Pfam ARD/ARD' family 357 510 IPR004313 GO:0010309
Chy05g00381 539 Pfam tify domain 144 172 IPR010399 -
Chy05g00381 539 MobiDBLite consensus disorder prediction 219 278 - -
Chy05g00381 539 MobiDBLite consensus disorder prediction 109 138 - -
Chy05g00381 539 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 354 523 IPR027496 GO:0016491|GO:0019509
Chy05g00381 539 CDD cupin_ARD 382 510 IPR004313 GO:0010309
Chy05g00381 539 SMART tify_2 138 173 IPR010399 -
Chy05g00381 539 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 339 533 - -
Chy05g00381 539 SUPERFAMILY RmlC-like cupins 356 528 IPR011051 -
Chy05g00381 539 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Chy05g00381 539 Gene3D Jelly Rolls 350 531 IPR014710 -
Chy05g00381 539 PANTHER ACIREDUCTONE DIOXYGENASE 339 533 IPR004313 GO:0010309
Chy05g00381 539 Pfam Jas motif 244 261 IPR018467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02154 Chy-Chr1:26178389 Chy05g00381 Chy-Chr5:4113914 7.65E-08 dispersed
Chy05g00381 Chy-Chr5:4113914 Chy06g00546 Chy-Chr6:3719849 2.42E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17989 PF03079 ARD 3.60E-57 CL0029 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00381 - - csv:101204377 661.759