Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00402 ATGGAAACCCCCTCAGCTTCAGATTCAAAACGCTCTTATTCATGGTGGTGGGACAGCCACATTAGCCCAAAGACTTCTAAATGGCTTCAAGAAAGTCTTTCAGATATGGATGAAAAAATCAAGCAGATGATCAAGGTTATTGAAGAAGATGCAGATTCCTTTGCAAAGAGGGCTGAGATGTATTACAAGAAGCGTCCAGAGCTTATGAAACTGGTGGAAGAGTTTTATCGGGCGTACCGTGCGTTGGCTGAAAGATACGATCATGCAACCGTGGTGATTCACCAGGCTCATCGAACGATGGCAGAAGCTTTTCCTAATCATATATCCATTGGTAATCCCGATGATGGTTCTGTTGGTTCTGCTTCTGATGTCAATTTTCGTACACCTGATAAACTGTCCCATGTTTGCACCTCGTTCGATTTTGACGCCATGGAACGAGATACTTTTGACTCACCTACATTTCATGCTGGCACTGGGGATAAAAACCAAACTTCCAGCAAAGGCTCCAATTTGATGGCAAGGGAGAAATGGTTGAAGCATCTTAATGAGTTGTTTAATTCAGGAGCAACTAAGAAACTTTCAAATTCTGAAAATCGGACGTCGAGAAAAGGTCTCAATTTTCATGATCTCGATCTGGAAGAAAAGAAAATAGAAAGTAATGGGAGCCATGATCTTAAGAATCAAGTATATGTTGAGTCTGAAAGGGTGGACAGAGCTGAGACTGAAATTATATCCTTAAAGAATTCCCTTGCTAAATTAGAAGCTGAAAAGGAAGTAGGTTTGGTTCAGTATAACAACAGTTTACAGCGGTTGTCTAAATTAGAGTCCGAAGTCTCTCGGACGCAAGAAGATTCGAGGGGTTTAAACGAAAGAGCTGGTAAGGCAGAGACTGAGGTTCTGATACTGAAAGAGTCTCTTGCAAAGCTAGAAACTGAAAGAGAAACAAGTCTTTTAAGATACCAGCAATGTTTAGATAAGTTATCTACTTTACAAGACAGCATCTTGTGTGTTCAAAAGAACGTTGAAAATACGGAGAGAGCAAGTAAAGCTGAAACTGAAGTTGAAAGACTAAAATGGGAAATTTCAAGAGTTGAATCTCAAAGAGAAGCTGCTCTTGTCCAATACAGAGAATCTTCTGATATAATTGTAAACTTAGAGGAAAGAGTAGTTCATGCAGAAGAGGATGCTAGAAGGTACAAGGTGCAATCTGATGAAGCTCAGATTGAAGTTCTAACTATTAGGCAAGCGCTCGCACAATTAGTGGAAGAAACAAAAGCTGCTGGTCTCAAACATCATTTATGTACAGAGAAGATTGCTGGTTTGGAACATCAAATCTCTAATGCACAAGACGAGCTAGAAAGGCTACAAGATGAAAAGGATAATGGGTTTGCAAAGTTGAAGGGTGCTGAAGAAAGGTGCCTTCATTTACAAAGGTCAAATCAAATTCTCCAATCTGAGATGGAGTCTATGGTGCAGAAGATCGGCTCACAAAGTGTAGAATTAATTGAGAAGCAGAAGGAGTTAGGAAGGCTTTGGACTTCCATACAGGATGAGCGTATGCGATATGTAGAGAACAAAACTGCTTTCAGAACATTGCAAGAACAGCATTCAAAATCTCAGGAAGAAATCAGATCAATGGCTGAAGATAGACAAATTCAGATAAAGACTTTGAAGGAGATGGAAACTCGAAATCAAGTGCTAGAGGATGAAGTTCAGAAGATTGAGGAGGAGAGAAGGAGCTTGGAGGATCTTAACGTGTCTTCAAAGTTGTCGATAAATTGTTTGCGGGATGAGATGTCAAACATGACTACAAATTTGGAAAAACTTGAAGCAAACCTTGAGTTTCAACTCAACCAAAAGAACGCTCTTGAGAAAGAGATTTTATGTCTAAAAGAAGAGCTTAGCGATCTGAAACAGAAGAATTTGATTATGTTGGAGCAGATCGAGTTTGTTGGCTTTGCGCCCGAGAACTTTGGATCGTCTGTGAAAGAACTACGTGATGAGAATTCAAAGATGATAGAGACAATTGAAGTGGAGAAGAGAGAAAAATCAGATCTCTTGGAAAAATTGAAAGACATGGAAGAACACAGTGAGAAAAATACTCTTCTAGAGAATGCTATCTCAAATTTACACATCGAATTAGAAAGCGAACAGACGAAAGTAAAGGTATTGGAAGAATGCTGTCAACTTCTCTCAGAAGAGAAATCCACTCTTGTAACCGAGAAGGCCTTCTTGTCTTCTCAATTGCAAATGGCTACTGAAAACTTAGAGGGACAGTCAGAGAAGAACACCCTTCTAGAGAGTTCACTTTCTGATGCAAACTTGGAAAGAAAACAACTTGCTGACAATGTGGAAAAGCTTCACTGTTTGAACAATGATCTTGAAGAGAAAGTAAGATTGTTGGAAGTCAATCTGGAAGATGTGCAACTGAAAAACTTGCATCTCAGGAAGTCATTAGACAGGTCAGAGCAAGAGCTTTTGGAAGCAGAACAGATTCTGATCATGATGCAGAATGAGAAGTCAGAGTTGCATAAGAGGGTGAAAGAACTTAGCATTGTGTGCGAAGAGGCTAAAGCGATTGTCGAAGAGAAAGAGAGTGTAATTGCGAAGCTTTCTGGTGATAGCAAACATCTAGTCAGAGAGATAGCATCCCAGCGGGAGCGAAACTGTACTTTGGAAGAGGAACTTGGAAAAGTTCAAGAAGATATTAAGCGGCATAAACATAGGGAGAAAAGTTTGAGGTGTGAGCTAGTGAAGAAGAGAATGGAGGTTGAGATATCTGAGACTCAGGCCGATGAACTGTTTGGTGAGCTCCAAATCTCTAATGTTCATGAAATAGTATTCAAGGAGAAGCTTCTTGAGCTCGATGAAGCATATGTGAACCTCGAAAATAGAAGTAATTACAGAGATGTGAAGACTGATACTACGAGAGAGAGAATTAATAACATAACCGATCTAAATGGAGAACTAGGAGTCCATTTGGCCAAATATACATCAGCGGTCACATCTTTAAACGATTCCGTATCCTATCTGGAGAATCATACTCTTCTGGGCAGAAAAACACATAAATATGAGAAACAAGAGGTAAAGGATACTCATTCAGTAAATCAACAGTATTCTGAAGGCTATCAGCAAAGATATCACGATCTGATTTCAACACTGCACAATGGATCATTTGAATTGAAGGATTTGCATAGAAGGATTCAGGCTGTGGAAATGGCTGTAATAGAAAAAGTGAAACTTGAAACTCTAGAAAACTTGAACTTCTCTGGGAAACAAGAGATGGTGACAAGAAGAGTCGAGGAAGCAGCTTGTGGAAATAGTTTGGTTAGGGAAAATGACCAAACAAGGCCTACAACTCCAAGAAGAGAGATTGAACTTGGAAATGAATTGCAGAGATCGATGACAAAAGTCTTTGAAGTTAGTGGTGAAATATTGACGAAGGACATCATTCTTGATCAAATGGCCAAATGCTCTAATGGGGTTGGCAAGAGAGAAGAGAATCTAGATGCTTACAATCAAATGCTGGAATTATGGGAGGCAACTGATGAGGATGGGAGCATTGATCTCATGGTTTGCAAATCTCAGAACATGGCCACTTCCTCAACTAACTATAACAGATTTGAAGTAGTAAAGGAACAGAATAAACGTCGCTCTACCGACTCATTGTTTGAGAAAGAGGTGGGAGTGGACATATTAGAGACCTCAAGTAGATTGTCAGTGCCTCTCCACAGACGAAAAGAGAGGAAGCTTCTTGAAAGGCTTGATTCTGATATGCAGAAATTGACGAACCTTCAAATAACCGTTCAAGATTTAACACGGATTGTGCTTACAAAGCAGAGTAGAAGGAATAATACAGGAGAATATGACACCATGAAAGAGCAACTTGAAGAAGTCGAGGCCGCTGTTATGAAGCTGTTTAATGCCAATTGCAAATTGATGAAGAATGTACAAGATGGCACCCTGTCTTCCGATGGAGCGTCCGCCATTGTATCTGATGAAGGTGGAAACGTCCGCAAAAGAATAATATCAGCACAAGCAAGAAGAGGGTCCAAAAAAATTGGGCAGCTGCAACTCGAAGTGCAGAGATTACAGTTTCTTCTACTGAAACAAGATGAAGAAAAAGAAACGAAGACGAAGACAAAGACGATTGAACGACCTAAAATTCGACTGCAGGATTATCTTTATGGTAGCATTAAAAGCAAGAATAAGAACAAGAAAGCTGCATTCTGTGGATGCATGCATGCCACAATGTCTCCAAGTCCAACAATAGGTGAATGGAGCTATTCAACTTCATTGGTAGGTAATCAGCATAGATTACGGAACTGA 4329 39.92 METPSASDSKRSYSWWWDSHISPKTSKWLQESLSDMDEKIKQMIKVIEEDADSFAKRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVVIHQAHRTMAEAFPNHISIGNPDDGSVGSASDVNFRTPDKLSHVCTSFDFDAMERDTFDSPTFHAGTGDKNQTSSKGSNLMAREKWLKHLNELFNSGATKKLSNSENRTSRKGLNFHDLDLEEKKIESNGSHDLKNQVYVESERVDRAETEIISLKNSLAKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQDSILCVQKNVENTERASKAETEVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIRQALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRTLQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLEDLNVSSKLSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKQKNLIMLEQIEFVGFAPENFGSSVKELRDENSKMIETIEVEKREKSDLLEKLKDMEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLADNVEKLHCLNNDLEEKVRLLEVNLEDVQLKNLHLRKSLDRSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIAKLSGDSKHLVREIASQRERNCTLEEELGKVQEDIKRHKHREKSLRCELVKKRMEVEISETQADELFGELQISNVHEIVFKEKLLELDEAYVNLENRSNYRDVKTDTTRERINNITDLNGELGVHLAKYTSAVTSLNDSVSYLENHTLLGRKTHKYEKQEVKDTHSVNQQYSEGYQQRYHDLISTLHNGSFELKDLHRRIQAVEMAVIEKVKLETLENLNFSGKQEMVTRRVEEAACGNSLVRENDQTRPTTPRREIELGNELQRSMTKVFEVSGEILTKDIILDQMAKCSNGVGKREENLDAYNQMLELWEATDEDGSIDLMVCKSQNMATSSTNYNRFEVVKEQNKRRSTDSLFEKEVGVDILETSSRLSVPLHRRKERKLLERLDSDMQKLTNLQITVQDLTRIVLTKQSRRNNTGEYDTMKEQLEEVEAAVMKLFNANCKLMKNVQDGTLSSDGASAIVSDEGGNVRKRIISAQARRGSKKIGQLQLEVQRLQFLLLKQDEEKETKTKTKTIERPKIRLQDYLYGSIKSKNKNKKAAFCGCMHATMSPSPTIGEWSYSTSLVGNQHRLRN* 1443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4303411 4308191 + Chy5G094480.1 Chy05g00402 226629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00402 1442 Coils Coil 777 839 - -
Chy05g00402 1442 Coils Coil 347 409 - -
Chy05g00402 1442 PANTHER PROTEIN NETWORKED 1C 778 1416 - -
Chy05g00402 1442 Coils Coil 662 713 - -
Chy05g00402 1442 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Chy05g00402 1442 Coils Coil 1245 1265 - -
Chy05g00402 1442 Coils Coil 264 312 - -
Chy05g00402 1442 Coils Coil 236 256 - -
Chy05g00402 1442 MobiDBLite consensus disorder prediction 155 169 - -
Chy05g00402 1442 Coils Coil 438 486 - -
Chy05g00402 1442 Coils Coil 1282 1309 - -
Chy05g00402 1442 Coils Coil 550 587 - -
Chy05g00402 1442 MobiDBLite consensus disorder prediction 150 169 - -
Chy05g00402 1442 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Chy05g00402 1442 PANTHER PROTEIN NETWORKED 4A 1 776 - -
Chy05g00402 1442 PANTHER PROTEIN NETWORKED 4A 778 1416 - -
Chy05g00402 1442 PANTHER PROTEIN NETWORKED 1C 1 776 - -
Chy05g00402 1442 Coils Coil 592 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00402 - - - csv:101216210 2679.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00402 Chy-Chr5:4303411 Chy06g00554 Chy-Chr6:3771421 1.67E-48 dispersed
Chy05g00402 Chy-Chr5:4303411 Chy01g01555 Chy-Chr1:21477802 4.83E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
Vvi7g65 Blo05g00374 . Bda04g00542 . . Bpe06g00454 . . Cmo08g00322 Cmo17g01177 Cma02g01788 Cma19g00026 Car02g01535 . . Cpe17g00868 Cpe15g00022 . . . . . . . Cla09g00678 Cam09g0711 Cec09g0703 Cco09g0700 Clacu09g0724 . Cre09g0689 . . Cone18ag0635 Cone11ag0931 Lsi02g02263 . Chy05g00402 . . Blo10g00017 Bda12g00010 . . Bpe11g00222 Bma09g00624 . . Cmo02g01834 Cmo19g00024 Cma08g00328 Cma17g01200 Car08g00295 Car17g01132 Cpe05g00028 Cpe12g01043 . . . . . . . Cla07g00040 Cam07g0040 Cec07g0071 Cco07g0043 Clacu07g0038 Cmu07g0104 Cre07g0411 Lsi05g00949 . . Cme05g00469
Vvi7g213 . . . . Bpe03g00443 . Bma10g01044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00402 . Blo07g00552 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g00469
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009252 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00402 Chy_Chr05 FPKM 18.753242 19.060047 22.940599 22.422512 20.300554 20.087847 20.992262 23.67886 23.565208 23.240734