Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00406 ATGGAAGAGGTTGAAGAAGCTAACAAATCAGCCATTGAGAGCTGCCATGGAGTTTTGAATCTTTTACTTCAACCTCCTCCTTCTCCTCATCATCAACACCATTTCAAAAATTTAATGGTTGAAACTAAAGAAGCTGTTTTCAAGTTCAAGAAAGTGATCTCTCTTTTAAACTCTGATTTTAGTCATCCAAGATTTAGAAATTTCAACAAAATCCCTCTCCCTTTACCTCAAAATTCCCTATTGGATTCCCCTAATTACACTCTACATCCTCCAAACAAAAATCTTTTCAATTTCCCCCCTGGTTTTAATAGTAAAGTTTCAATTTTTTTGGGAAACCCAGATTTAGAATTGAGTCAAAATGATAAGAATTCCATTCATATCCCCAAACAATCTCCTTCTTTAAACTTTAGCTTCCCTCATCATCATCATCCTCAACAACAACAGAGCGTTCTGGCTCATCAGAAACAAATGAAACAGCAAGCTGAAATGATGTTTCTTAAGAATAACAATGGGATGAATCTGAATTTTGATACTTCTAACTGTACCTTGACAATGTCATCAGCTAGATCTTTCATTTCTTCATTGAGTATGGATGGCAGCGTCATTGGCGACAGAAGCTCGTTTCATTTGATTGGACCGTCAACCACGACCACGACAACGTCAGGCAATAGCAAGAGGAAGTTTTCTGCTAGAGGAGAAGAAGGGAGCTTGAAATGTGGAAGCACTAGTAAATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATAAAAGTACCTGCCATAAGTAACAAACTTGCAGATATTCCTTCCGATGATTATTCATGGAGAAAATATGGGCAAAAGCCAATTAAGGGTTCTCCTCATCCAAGGGGTTACTACAAATGCAGCAGCATAAGAGGTTGTCCGGCAAGAAAGCATGTCGAGCGATGCTTAGAAGACCCGTCGATGCTTATTGTAACATACGAAGGAGAACATAATCACCCGAAATTGTCGACGCAATCTGCACACACTTAG 1023 38.81 MEEVEEANKSAIESCHGVLNLLLQPPPSPHHQHHFKNLMVETKEAVFKFKKVISLLNSDFSHPRFRNFNKIPLPLPQNSLLDSPNYTLHPPNKNLFNFPPGFNSKVSIFLGNPDLELSQNDKNSIHIPKQSPSLNFSFPHHHHPQQQQSVLAHQKQMKQQAEMMFLKNNNGMNLNFDTSNCTLTMSSARSFISSLSMDGSVIGDRSSFHLIGPSTTTTTTSGNSKRKFSARGEEGSLKCGSTSKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSIRGCPARKHVERCLEDPSMLIVTYEGEHNHPKLSTQSAHT* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4332849 4334527 - Chy5G094520.1 Chy05g00406 226633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00406 340 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 340 IPR044810 GO:0003700
Chy05g00406 340 PANTHER WRKY TRANSCRIPTION FACTOR 74-RELATED 2 340 - -
Chy05g00406 340 Gene3D WRKY domain 259 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy05g00406 340 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy05g00406 340 SUPERFAMILY WRKY DNA-binding domain 270 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy05g00406 340 Pfam WRKY DNA -binding domain 274 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy05g00406 340 Pfam Plant zinc cluster domain 234 270 IPR018872 -
Chy05g00406 340 SMART WRKY_cls 272 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g01525 Chy05g00406 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01523 Chy-Chr1:21045659 Chy05g00406 Chy-Chr5:4332849 1.44E-23 dispersed
Chy01g01525 Chy-Chr1:21049887 Chy05g00406 Chy-Chr5:4332849 5.51E-121 dispersed
Chy02g00896 Chy-Chr2:5782349 Chy05g00406 Chy-Chr5:4332849 4.73E-56 dispersed
Chy05g00406 Chy-Chr5:4332849 Chy11g00548 Chy-Chr11:6055556 1.41E-51 dispersed
Chy05g00406 Chy-Chr5:4332849 Chy07g00148 Chy-Chr7:1276049 4.84E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17991 PF03106 WRKY 2.30E-26 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00406 - - csv:101214847 647.506