Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00411 ATGGGTGGTGATGGGTTTGTAATCCCTGTGGAATCTCAGGTTAGTTCGGTGAAGAAGAAGAAGAAGCAGACTACGACGAAGAAGAAGACTACTGCGGTTTCCAGAAGCTGGGTTTCGTTGGACCGTGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCCATTATGGAAAGAGTTCAGATTAATGCCAGAGATCTTCGGCTTCTTGATCCTTTGTTGTCCTATCCTTCCACTATCTTGGGTAGAGAAAGAGTAATTGTTCTCAATTTGGAGCATATCAAATCTATTATCACGGCAGACGAGGTGTTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTCGAAGAACTGCAGAGACGGTTGCCTTCGACAAATTCCCTATACCATGGACAAGGGGAAGAAGAAGAGCCATCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAATTTCGTGCTATAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAATTAGAGACTGATACTTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAAAGTGCAATGACAAGGTTGACAAATCGGGTACAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGATGATGACGACATGGCAGAACTTTACTTATCACGTAAAGTAGCTGGCACCCCTGAAAGTGGCTCAGGGACTCCAATCTGGTTTCTTGCTTCTCCTAAGGACTATTCAAAGATCTCTAGAACAAGTAGAGTGAGTGCGATTACTATTCGAGGAGAGAATGATGTTGAGGAACTTGAAATGCTACTCGAGGCTTACTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTATATTGATGACACAGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTCATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCGATATTTGGAATGAATATACCATACACCTGGAGGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCGTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCATATGCTCGATACAAAGGTCTCGTTGGATCTTGA 1194 41.79 MGGDGFVIPVESQVSSVKKKKKQTTTKKKTTAVSRSWVSLDREGRSTILDVDKYAIMERVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSLYHGQGEEEEPSTTQNELAENEFPFEFRAIEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKISRTSRVSAITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWREDHEHVFKWVVIVTGIVCATIYVSLSSYARYKGLVGS* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4368486 4374462 - Chy5G094570.1 Chy05g00411 226638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00411 397 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 333 384 IPR045863 -
Chy05g00411 397 PANTHER MAGNESIUM TRANSPORTER MRS2-LIKE PROTEIN 6 397 - -
Chy05g00411 397 Gene3D Magnesium transport protein CorA, transmembrane region 334 388 - -
Chy05g00411 397 Gene3D Magnesium transport protein CorA, transmembrane region 111 327 - -
Chy05g00411 397 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 397 IPR039204 -
Chy05g00411 397 CDD Mrs2_Mfm1p-like 37 394 IPR039204 -
Chy05g00411 397 Pfam CorA-like Mg2+ transporter protein 283 382 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Chy05g00411 397 Coils Coil 200 227 - -
Chy05g00411 397 Gene3D - 18 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00411 K16075 MRS2, MFM1; magnesium transporter - csv:101220452 725.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00362 Chy-Chr5:3828835 Chy05g00411 Chy-Chr5:4368486 0 dispersed
Chy05g00411 Chy-Chr5:4368486 Chy06g01142 Chy-Chr6:9979034 1.14E-108 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g27 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy05g00411 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g00459
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01335 . 1 426 MRS2 Gene Family AT1G16010 81.3 1.3e-191 666.0
Chy03g00716 . 1 378 MRS2 Gene Family AT1G16010 52.7 3.4e-107 385.6
Chy01g00143 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Chy05g00362 . 1 366 MRS2 Gene Family AT5G64560 79.9 8.1e-158 553.5
Chy05g00411 . 1 370 MRS2 Gene Family AT5G64560 69.0 8.4e-131 463.8
Chy01g00143 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Chy01g00142 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Chy06g01142 . 59 444 MRS2 Gene Family AT3G58970 69.5 5.1e-140 494.6
Chy03g00716 . 3 378 MRS2 Gene Family AT2G03620 68.4 7.4e-136 480.7
Chy04g01335 . 13 423 MRS2 Gene Family AT2G03620 53.9 4.7e-106 381.7
Chy05g00362 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Chy05g00411 . 1 332 MRS2 Gene Family AT5G09690 65.7 8.2e-111 397.1
Chy04g01335 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Chy05g00362 . 23 288 MRS2 Gene Family AT5G09720 67.6 1.1e-88 323.6
Chy05g00411 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.2e-77 285.4
Chy04g01335 . 1 419 MRS2 Gene Family AT1G80900 84.7 2.3e-188 655.2
Chy03g00716 . 1 378 MRS2 Gene Family AT1G80900 54.1 3.2e-105 379.0
Chy12g00750 . 53 392 MRS2 Gene Family AT5G22830 83.5 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00411 Chy_Chr05 FPKM 45.495087 45.733871 21.03121 21.756582 3.314571 3.952316 3.974781 36.216881 36.451267 40.391064