Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00411 ATGGGTGGTGATGGGTTTGTAATCCCTGTGGAATCTCAGGTTAGTTCGGTGAAGAAGAAGAAGAAGCAGACTACGACGAAGAAGAAGACTACTGCGGTTTCCAGAAGCTGGGTTTCGTTGGACCGTGAAGGAAGGAGTACGATTTTGGATGTGGATAAGTATGCCATTATGGAAAGAGTTCAGATTAATGCCAGAGATCTTCGGCTTCTTGATCCTTTGTTGTCCTATCCTTCCACTATCTTGGGTAGAGAAAGAGTAATTGTTCTCAATTTGGAGCATATCAAATCTATTATCACGGCAGACGAGGTGTTGCTTAGAGATCCAATGGATGAAAATGTAGTTCCAATTGTCGAAGAACTGCAGAGACGGTTGCCTTCGACAAATTCCCTATACCATGGACAAGGGGAAGAAGAAGAGCCATCTACCACCCAAAATGAGTTGGCTGAAAACGAATTTCCATTTGAATTTCGTGCTATAGAGGTCGCACTCGAAGCAATTTGTAGTTTTCTTGATGCACGCACAAGAGAATTAGAGACTGATACTTATCCTGCTTTAGATGAGCTGACCTCCAAGATTAGCAGTCGTAACTTGGACCGAGTGCGCAAACTGAAAAGTGCAATGACAAGGTTGACAAATCGGGTACAAAAGGTTAGGGATGAACTTGAACAACTTCTGGATGATGATGACGACATGGCAGAACTTTACTTATCACGTAAAGTAGCTGGCACCCCTGAAAGTGGCTCAGGGACTCCAATCTGGTTTCTTGCTTCTCCTAAGGACTATTCAAAGATCTCTAGAACAAGTAGAGTGAGTGCGATTACTATTCGAGGAGAGAATGATGTTGAGGAACTTGAAATGCTACTCGAGGCTTACTTTATGCAAATTGAAGGTACATTAAACAAACTAATCACGTTGCGGGAGTATATTGATGACACAGAGGATTACATCAATATTCAGCTTGACAATCACAGGAATCAACTCATTCAGCTAGAACTCTTTTTGAGCTCTGGGACTGTTTGTTTGTCTATTTATTCTTTAGTGACTGCGATATTTGGAATGAATATACCATACACCTGGAGGGAAGATCATGAACATGTATTCAAATGGGTGGTCATCGTGACAGGAATAGTTTGTGCAACCATTTATGTGTCACTAAGCTCATATGCTCGATACAAAGGTCTCGTTGGATCTTGA 1194 41.79 MGGDGFVIPVESQVSSVKKKKKQTTTKKKTTAVSRSWVSLDREGRSTILDVDKYAIMERVQINARDLRLLDPLLSYPSTILGRERVIVLNLEHIKSIITADEVLLRDPMDENVVPIVEELQRRLPSTNSLYHGQGEEEEPSTTQNELAENEFPFEFRAIEVALEAICSFLDARTRELETDTYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMAELYLSRKVAGTPESGSGTPIWFLASPKDYSKISRTSRVSAITIRGENDVEELEMLLEAYFMQIEGTLNKLITLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVTAIFGMNIPYTWREDHEHVFKWVVIVTGIVCATIYVSLSSYARYKGLVGS* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4368486 4374462 - Chy5G094570.1 Chy05g00411 226638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00411 397 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 333 384 IPR045863 -
Chy05g00411 397 PANTHER MAGNESIUM TRANSPORTER MRS2-LIKE PROTEIN 6 397 - -
Chy05g00411 397 Gene3D Magnesium transport protein CorA, transmembrane region 334 388 - -
Chy05g00411 397 Gene3D Magnesium transport protein CorA, transmembrane region 111 327 - -
Chy05g00411 397 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 397 IPR039204 -
Chy05g00411 397 CDD Mrs2_Mfm1p-like 37 394 IPR039204 -
Chy05g00411 397 Pfam CorA-like Mg2+ transporter protein 283 382 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Chy05g00411 397 Coils Coil 200 227 - -
Chy05g00411 397 Gene3D - 18 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00362 Chy-Chr5:3828835 Chy05g00411 Chy-Chr5:4368486 0 dispersed
Chy05g00411 Chy-Chr5:4368486 Chy06g01142 Chy-Chr6:9979034 1.14E-108 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00411 K16075 - csv:101220452 725.702