Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00519 ATGACAATCGACCATATGTCCCATCAAACACGCACTTCCACCAGCATTAACGATGATGATTCCGACCATCTCCATCCTACTCTTCCCACGCCACTTGTCTCCAATGGCACGGACTACAATAATGCCGGAGATGACCTCTTTGTTCCTCCCTTGAACTTCGCTGTCGTTGACACCGGCATTTTTCGCTCTGGTTTCCCTGACTCTTCCAACTTCTCTTTCTTGCAGACATTAGGCCTTCGGTCTATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCTAGCATGGATTTCCTCAACTCCAATGGGATCCGATTGTTTCAATTTGGTATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATTTGAGCGCAGATCAAATGTACTATTTGGAGCCTTTTGTCAACATTCCAGACTACACGATTCGTGAAGTACTTAAAATTATTCTTGATGTGAGGAATCGACCGGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGATGTGTTGTGGGATGCTTTAGAAAGGTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTATCAGAGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGATTCATTGAACTATTCGACATTTCTGAGTTGAAGCTTTTGCCATCATCATTTTCATGCTCCGAAAGATAA 720 44.03 MTIDHMSHQTRTSTSINDDDSDHLHPTLPTPLVSNGTDYNNAGDDLFVPPLNFAVVDTGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASMDFLNSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDLSADQMYYLEPFVNIPDYTIREVLKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKVQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISELKLLPSSFSCSER* 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5629593 5632015 - Chy5G095650.1 Chy05g00519 226746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00519 239 MobiDBLite consensus disorder prediction 1 30 - -
Chy05g00519 239 CDD PFA-DSP_Siw14 46 223 - -
Chy05g00519 239 ProSitePatterns Tyrosine specific protein phosphatases active site. 172 182 IPR016130 GO:0016311|GO:0016791
Chy05g00519 239 PANTHER TYROSINE-PROTEIN PHOSPHATASE 1 238 - -
Chy05g00519 239 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 224 IPR029021 -
Chy05g00519 239 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 236 IPR020422 GO:0006470|GO:0008138
Chy05g00519 239 Pfam Tyrosine phosphatase family 48 227 IPR004861 -
Chy05g00519 239 PRINTS Plant and fungal dual specificity phosphatase signature 150 164 IPR020428 GO:0016791
Chy05g00519 239 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791
Chy05g00519 239 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791
Chy05g00519 239 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791
Chy05g00519 239 PANTHER - 1 238 - -
Chy05g00519 239 Gene3D Protein tyrosine phosphatase superfamily 46 226 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00519 K18045 SIW14, OCA3; tyrosine-protein phosphatase SIW14 [EC:3.1.3.48] - csv:101209768 406.371
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00519 Chy-Chr5:5629593 Chy11g00950 Chy-Chr11:13243491 2.22E-97 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00519 Chy_Chr05 FPKM 0.49075 1.011707 35.393265 32.611626 21.370373 15.011601 19.913778 1.072225 0.724559 0.865769