Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00521 ATGGAGCTCCGGCACAGGCACCGGCGAGCCACGGATCCATTGACGGTGCCAGAATCAGTCCAAGAACCTGTTAAAGAAGTCCGATTCAGAGGCGTTCGGAAGCGTCCATGGGGACGATACGCCGCCGAGATTAGAGATCCTTGGAAGAAAACTCGAGTTTGGCTAGGTACCTTCGATACGGCGGAGGATGCTGCCAGAGCTTACGATGAAGCTGCTCTCTCTCTTCGAGGACCGAAGGCGAAAACGAACTTCCCTTTGCATCCTTCTACTATCTCTGTTCATCAACAAATTCCATTCTCGCAGCAGTTTCATGATTCCGGTGGATTCTGTGAGATTAGTAACATTATTCCAGTTAATAGACCTACATCGAGTAGTCTGAGCTCCACCGTGGAGTCATTTAGCGGGCCACGGCTTTCGATTCCGGCTCCGTCGGTTCCAAAGCTTCGCCGGAAGTCCCTGCCGCAGGTCGCTCCCGACGATGGCCATAGCGACTGTGATTCGTCGTCTTCGGTTGTTGATGACAGTGAGGAATATGCTCACTCGTCGTCAATTCGTAGAGTGTTGCCGTTCGATCTGAATCTACCTCCTGCACTGCCGCCGCCGCATGACGTCGATTTATCCGGTGATGATCTTCATGCCACTGCTCTGTGTTTTTGA 657 52.36 MELRHRHRRATDPLTVPESVQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSSSLSSTVESFSGPRLSIPAPSVPKLRRKSLPQVAPDDGHSDCDSSSSVVDDSEEYAHSSSIRRVLPFDLNLPPALPPPHDVDLSGDDLHATALCF* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5656034 5656848 + Chy5G095670.1 Chy05g00521 226748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00521 218 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Chy05g00521 218 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Chy05g00521 218 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Chy05g00521 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 22 192 - -
Chy05g00521 218 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Chy05g00521 218 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Chy05g00521 218 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Chy05g00521 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 192 - -
Chy05g00521 218 MobiDBLite consensus disorder prediction 126 176 - -
Chy05g00521 218 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Chy05g00521 218 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00521 Chy-Chr5:5656034 Chy11g00957 Chy-Chr11:13517880 2.42E-76 dispersed
Chy07g01558 Chy-Chr7:19824529 Chy05g00521 Chy-Chr5:5656034 2.37E-25 dispersed
Chy07g01612 Chy-Chr7:20241031 Chy05g00521 Chy-Chr5:5656034 7.48E-23 dispersed
Chy05g00521 Chy-Chr5:5656034 Chy01g00321 Chy-Chr1:2312842 9.86E-32 transposed
Chy05g00521 Chy-Chr5:5656034 Chy02g00280 Chy-Chr2:1832881 3.87E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17998 PF00847 AP2 6.50E-15 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00521 K09286 - csv:101210265 383.645