Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00536 ATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTCTCTCGATTCACTCTCCATCTTCCCTCCAAACCATCCTTCTTTCACTCCAAACAAACCCCACTTTCAACTCCACATTCCACTCTTACAGACCAACTTCCCACTTCCAATTCTTCCCAACCCCTTCAGTCCCAAATTCTCTCCATCCGCCATTCACTTCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGACTCCTATCTCAATCGCCTTCGTGCGTTGGAGCCTCACCTCAAGTCATTTCTCCACGTCTCTGAAACTGTCCGCTCTGATGCCCGTGAGATTGATGACAAAATTCTCAGAAATGAGGAACTGGGTCCTTTAGCTGGGGTGCTTGTGGCCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGCTGGGTCTCGGATTCTTGATGGATATCGCCCACCATTTGATGCTACTGCCGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGATTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGCTCTACTGAAGCCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGGGTCCCGGGAGGATCATCAGGAGGATCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGGTTGAAACCCACATATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCTTCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCATGATACCCTTGATGCCACTAGTAGTAAACGAGAGGTTTCTGATTTCACATCACAATTTTCTGCCGTTGATTCATTCGAATCTAAACCCTTGAAAGGATTGAGGATTGGCCTGATTCGTGAAACCCTTGATAAGGGTGTCGATGGTCAAGTAAATTCTGCTATACGTGCTGCTGCTTCACATCTAGAAGAACTAGGATGTTCCATCAATGAGGTATCACTACCATCATTTTCTCTTGGGCTGCCAGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCACGATATGATGGTGTCAGATATGGAAATCAATCTATTGCTGATGAGCTAACTGGTCTATATGAAAATTCCCGAGCAACAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACAATTATCCAGAAAAGCTTCAGAGCAGCACTAGATGAAAATGACATCTTAATATCACCTGCTGCACCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGATAACCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTGGCTGGACTACCTGCATTGGTATTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGAACACTTCTTAAAGTGGGACACATCTTCGAACAAACTCTTGCGGACTGCAGATTTGTTCCACCCTTACTAGCTGACGACATTATATCGAAAAAGATGTCGGGCCAAACCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCTATGAAAGCTCGTCTGGTTGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTTAAGAAGATTGTTTCAGCCAAGGAATCAATGGGAGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTCCTGGAGAATGTCCAAACTGCAGCTATCAAGATTCGATCTCGACAGGAGAATATTGCTGGTGTGAAACTCCCGAAATTTGAACATTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCCAGGGGTGGTCAACAGATCCAGCTGTGTCGGGGCGCCTATGTTAAAGCAATTGAGGTTCTTGTTGAGCTTGCTTCACTCCAGACATCATTTTTGACCCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTCAATGCTCTTGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTAGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAAAGAAGGGAAATTGAGAGACAACGAGCCAACGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGGTATCTTTGCAAAAGGGTGTCTCCATAAGTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA 2442 44.72 MLSTLQPPRCSLSRFTLHLPSKPSFFHSKQTPLSTPHSTLTDQLPTSNSSQPLQSQILSIRHSLLSRQITATQLADSYLNRLRALEPHLKSFLHVSETVRSDAREIDDKILRNEELGPLAGVLVAVKDNICTAGMPSTAGSRILDGYRPPFDATAVKRIKELGGIVIGKTNLDEFGMGSSTEASAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVSDFTSQFSAVDSFESKPLKGLRIGLIRETLDKGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQSIADELTGLYENSRATGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDNPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGTLLKVGHIFEQTLADCRFVPPLLADDIISKKMSGQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRANAKLFAEEQLAEKVSLQKGVSISSAHNLLSAAAEKDEDIIF* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5750842 5758439 + Chy5G095820.1 Chy05g00536 226763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00536 813 Gene3D - 552 750 - -
Chy05g00536 813 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 54 531 - -
Chy05g00536 813 MobiDBLite consensus disorder prediction 27 52 - -
Chy05g00536 813 Pfam ATP synthase subunit D 569 760 IPR002699 GO:0046961
Chy05g00536 813 SUPERFAMILY Amidase signature (AS) enzymes 55 541 IPR036928 -
Chy05g00536 813 TIGRFAM V_ATPase_subD: V-type ATPase, D subunit 561 763 IPR002699 GO:0046961
Chy05g00536 813 ProSitePatterns Amidases signature. 200 231 IPR020556 -
Chy05g00536 813 Gene3D Amidase signature (AS) domain 52 538 IPR036928 -
Chy05g00536 813 TIGRFAM gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 62 534 IPR004412 GO:0006412|GO:0030956|GO:0050567
Chy05g00536 813 PANTHER TRANSAMIDASE 54 531 IPR000120 GO:0003824
Chy05g00536 813 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 60 535 IPR004412 GO:0006412|GO:0030956|GO:0050567
Chy05g00536 813 Pfam Amidase 75 524 IPR023631 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00536 Chy-Chr5:5750842 Chy08g00392 Chy-Chr8:9361702 1.36E-38 dispersed
Chy05g00536 Chy-Chr5:5750842 Chy11g00283 Chy-Chr11:2603104 2.92E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00536 K02433 - csv:101212627 1042.72