Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00556 ATGGCTATGACAGCTTTGCTGTACCATTTACTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGAAGTTATTTCATCTTTTCAGAAGGAATTTTGGAAAAGATCTTCTTGCTGACTGGAGGAAAAGAATCAAGGAAGAGGGCTTTCTGTTTTTCCGAAACAAAGCTATTTGTAAAGTTCATTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGTGGGAAGCAACTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAAGATATCATAGCCAATTCGAAGATCTTTATGACAGCCTTGGAAAAGCTCCACTCCCTCATGGGAACTAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGAATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTTAATTTTCCTTCGACGGCCACCAATGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACGCAAGGGGTGACTTCTATGTTGCCGCCATCGGATAATCAGGCAGCATCCCACCAACCACAGAGCACAGCAACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGTGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACCGTTACTGTAGGAACGGAGAAGCTAAAGGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCTCAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAAATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACTGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGAACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACTGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGAGGAAGACGAGGACGACGACGAAGAGGATGAAGAGGACGACTCAGAAGAAGACGCATCTCCACATGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACGAGAACAACAGGAGTAGAGAATTTTAGAAAGGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTGGCTGGGGATTCGGTAATGGTGGAGGTGGATTCAAAGGAAGTACCAGAACCAACAACAGCAGAACCAACAACAGCAGAACCAACAACAGCAGCAGCCATTAGAGAAGATTAA 1734 44.52 MAMTALLYHLLFWVFESLPYYWKLFHLFRRNFGKDLLADWRKRIKEEGFLFFRNKAICKVHWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPVIEVASNCVPYPPPQTTYEDIIANSKIFMTALEKLHSLMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPQSTATELPAVSPSSTSPVGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKEEDEDDDEEDEEDDSEEDASPHGIGNVDVNILVEEEQCETRTTGVENFRKESSTVGDKKEVLAGDSVMVEVDSKEVPEPTTAEPTTAEPTTAAAIRED* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6082640 6087513 + Chy5G096020.1 Chy05g00556 226783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00556 577 Pfam HMG (high mobility group) box 350 417 IPR009071 -
Chy05g00556 577 Coils Coil 399 419 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 330 344 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 318 357 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 475 497 - -
Chy05g00556 577 CDD HMGB-UBF_HMG-box 350 413 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 550 577 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 222 265 - -
Chy05g00556 577 Gene3D High mobility group box domain 334 429 IPR036910 -
Chy05g00556 577 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 70 490 - -
Chy05g00556 577 SUPERFAMILY ARID-like 113 219 IPR036431 GO:0003677
Chy05g00556 577 Pfam ARID/BRIGHT DNA binding domain 120 203 IPR001606 GO:0003677
Chy05g00556 577 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 350 417 IPR009071 -
Chy05g00556 577 ProSiteProfiles ARID domain profile. 116 207 IPR001606 GO:0003677
Chy05g00556 577 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 70 490 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 431 511 - -
Chy05g00556 577 Gene3D - 109 210 IPR036431 GO:0003677
Chy05g00556 577 SUPERFAMILY HMG-box 343 422 IPR036910 -
Chy05g00556 577 SMART ARID_2 113 203 - -
Chy05g00556 577 CDD ARID_HMGB9-like 118 203 IPR045303 GO:0003677
Chy05g00556 577 SMART hmgende2 349 418 IPR009071 -
Chy05g00556 577 MobiDBLite consensus disorder prediction 444 458 - -
Chy05g00556 577 SMART bright_3 117 208 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01519 Chy-Chr4:21777365 Chy05g00556 Chy-Chr5:6082640 6.07E-10 dispersed
Chy05g00556 Chy-Chr5:6082640 Chy07g00366 Chy-Chr7:2961623 7.38E-43 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17999 PF01388 ARID 2.50E-17 CL0123 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00556 - - csv:101205891 940.258