Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy05g00556 ATGGCTATGACAGCTTTGCTGTACCATTTACTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGAAGTTATTTCATCTTTTCAGAAGGAATTTTGGAAAAGATCTTCTTGCTGACTGGAGGAAAAGAATCAAGGAAGAGGGCTTTCTGTTTTTCCGAAACAAAGCTATTTGTAAAGTTCATTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGTGGGAAGCAACTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAAGATATCATAGCCAATTCGAAGATCTTTATGACAGCCTTGGAAAAGCTCCACTCCCTCATGGGAACTAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGAATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTTAATTTTCCTTCGACGGCCACCAATGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACGCAAGGGGTGACTTCTATGTTGCCGCCATCGGATAATCAGGCAGCATCCCACCAACCACAGAGCACAGCAACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGTGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACCGTTACTGTAGGAACGGAGAAGCTAAAGGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCTCAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAAATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACTGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGAACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACTGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGAGGAAGACGAGGACGACGACGAAGAGGATGAAGAGGACGACTCAGAAGAAGACGCATCTCCACATGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACGAGAACAACAGGAGTAGAGAATTTTAGAAAGGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTGGCTGGGGATTCGGTAATGGTGGAGGTGGATTCAAAGGAAGTACCAGAACCAACAACAGCAGAACCAACAACAGCAGAACCAACAACAGCAGCAGCCATTAGAGAAGATTAA 1734 44.52 MAMTALLYHLLFWVFESLPYYWKLFHLFRRNFGKDLLADWRKRIKEEGFLFFRNKAICKVHWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPVIEVASNCVPYPPPQTTYEDIIANSKIFMTALEKLHSLMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPQSTATELPAVSPSSTSPVGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKEEDEDDDEEDEEDDSEEDASPHGIGNVDVNILVEEEQCETRTTGVENFRKESSTVGDKKEVLAGDSVMVEVDSKEVPEPTTAEPTTAEPTTAAAIRED* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6082640 6087513 + Chy5G096020.1 Chy05g00556 226783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy05g00556 577 Pfam HMG (high mobility group) box 350 417 IPR009071 -
Chy05g00556 577 Coils Coil 399 419 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 330 344 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 318 357 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 475 497 - -
Chy05g00556 577 CDD HMGB-UBF_HMG-box 350 413 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 550 577 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 222 265 - -
Chy05g00556 577 Gene3D High mobility group box domain 334 429 IPR036910 -
Chy05g00556 577 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 70 490 - -
Chy05g00556 577 SUPERFAMILY ARID-like 113 219 IPR036431 GO:0003677
Chy05g00556 577 Pfam ARID/BRIGHT DNA binding domain 120 203 IPR001606 GO:0003677
Chy05g00556 577 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 350 417 IPR009071 -
Chy05g00556 577 ProSiteProfiles ARID domain profile. 116 207 IPR001606 GO:0003677
Chy05g00556 577 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 70 490 - -
Chy05g00556 577 MobiDBLite consensus disorder prediction 431 511 - -
Chy05g00556 577 Gene3D - 109 210 IPR036431 GO:0003677
Chy05g00556 577 SUPERFAMILY HMG-box 343 422 IPR036910 -
Chy05g00556 577 SMART ARID_2 113 203 - -
Chy05g00556 577 CDD ARID_HMGB9-like 118 203 IPR045303 GO:0003677
Chy05g00556 577 SMART hmgende2 349 418 IPR009071 -
Chy05g00556 577 MobiDBLite consensus disorder prediction 444 458 - -
Chy05g00556 577 SMART bright_3 117 208 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy05g00556 - - - csv:101205891 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01519 Chy-Chr4:21777365 Chy05g00556 Chy-Chr5:6082640 6.07E-10 dispersed
Chy05g00556 Chy-Chr5:6082640 Chy07g00366 Chy-Chr7:2961623 7.38E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00556 . 82 447 ARID Transcription Factor Family AT1G04880 56.2 7.2e-105 377.9
Chy06g02296 . 483 753 ARID Transcription Factor Family AT1G20910 61.4 5.2e-91 331.6
Chy07g00366 . 23 195 ARID Transcription Factor Family AT1G76110 65.0 3.5e-59 225.7
Chy06g02296 . 462 783 ARID Transcription Factor Family AT1G76510 60.2 4.7e-109 391.7
Chy04g00729 . 1 773 ARID Transcription Factor Family AT3G43240 59.4 1.8e-265 912.1
Chy01g02133 . 2 771 ARID Transcription Factor Family AT3G43240 57.6 2.5e-259 891.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17999 PF01388 ARID 2.50E-17 CL0123 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy05g00556 Chy_Chr05 FPKM 2.66122 2.224781 0.447174 0.364003 2.858175 3.376326 3.6599 1.396003 1.431069 1.303915