Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy05g00556 | ATGGCTATGACAGCTTTGCTGTACCATTTACTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGAAGTTATTTCATCTTTTCAGAAGGAATTTTGGAAAAGATCTTCTTGCTGACTGGAGGAAAAGAATCAAGGAAGAGGGCTTTCTGTTTTTCCGAAACAAAGCTATTTGTAAAGTTCATTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGTGGGAAGCAACTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAAGATATCATAGCCAATTCGAAGATCTTTATGACAGCCTTGGAAAAGCTCCACTCCCTCATGGGAACTAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGAATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTTAATTTTCCTTCGACGGCCACCAATGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCTGATTCCTCTCCATGCCCAAGTGCATCGGCAATTCCTACGCAAGGGGTGACTTCTATGTTGCCGCCATCGGATAATCAGGCAGCATCCCACCAACCACAGAGCACAGCAACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGTGGGAGGGTTTCCAGTGATTGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACCGTTACTGTAGGAACGGAGAAGCTAAAGGGCGTGCTTTATCAGGCTCCTGAGCAACCTTCTCAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTTCCACCCCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTTTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAAATAAGCAGAATGATTGGCGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACTGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGAACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGGTGACAAAAATGAAGAAACTGAGGGCGGCGAGTCTCAAACACCAGATCATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTACAAAACAGAAGAGAAGGAGGAAGACGAGGACGACGACGAAGAGGATGAAGAGGACGACTCAGAAGAAGACGCATCTCCACATGGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGTGAGACGAGAACAACAGGAGTAGAGAATTTTAGAAAGGAGAGTAGCACAGTTGGTGATAAGAAAGAAGTTTTGGCTGGGGATTCGGTAATGGTGGAGGTGGATTCAAAGGAAGTACCAGAACCAACAACAGCAGAACCAACAACAGCAGAACCAACAACAGCAGCAGCCATTAGAGAAGATTAA | 1734 | 44.52 | MAMTALLYHLLFWVFESLPYYWKLFHLFRRNFGKDLLADWRKRIKEEGFLFFRNKAICKVHWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPVIEVASNCVPYPPPQTTYEDIIANSKIFMTALEKLHSLMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPTQGVTSMLPPSDNQAASHQPQSTATELPAVSPSSTSPVGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQPQVLQPVGAFAKDGSTPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDHDTSYVEGDSGEYKTEEKEEDEDDDEEDEEDDSEEDASPHGIGNVDVNILVEEEQCETRTTGVENFRKESSTVGDKKEVLAGDSVMVEVDSKEVPEPTTAEPTTAEPTTAAAIRED* | 578 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6082640 | 6087513 | + | Chy5G096020.1 | Chy05g00556 | 226783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy05g00556 | 577 | Pfam | HMG (high mobility group) box | 350 | 417 | IPR009071 | - | |
Chy05g00556 | 577 | Coils | Coil | 399 | 419 | - | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 330 | 344 | - | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 318 | 357 | - | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 475 | 497 | - | - | |
Chy05g00556 | 577 | CDD | HMGB-UBF_HMG-box | 350 | 413 | - | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 550 | 577 | - | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 222 | 265 | - | - | |
Chy05g00556 | 577 | Gene3D | High mobility group box domain | 334 | 429 | IPR036910 | - | |
Chy05g00556 | 577 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 70 | 490 | - | - | |
Chy05g00556 | 577 | SUPERFAMILY | ARID-like | 113 | 219 | IPR036431 | GO:0003677 | |
Chy05g00556 | 577 | Pfam | ARID/BRIGHT DNA binding domain | 120 | 203 | IPR001606 | GO:0003677 | |
Chy05g00556 | 577 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 350 | 417 | IPR009071 | - | |
Chy05g00556 | 577 | ProSiteProfiles | ARID domain profile. | 116 | 207 | IPR001606 | GO:0003677 | |
Chy05g00556 | 577 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 70 | 490 | - | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 431 | 511 | - | - | |
Chy05g00556 | 577 | Gene3D | - | 109 | 210 | IPR036431 | GO:0003677 | |
Chy05g00556 | 577 | SUPERFAMILY | HMG-box | 343 | 422 | IPR036910 | - | |
Chy05g00556 | 577 | SMART | ARID_2 | 113 | 203 | - | - | |
Chy05g00556 | 577 | CDD | ARID_HMGB9-like | 118 | 203 | IPR045303 | GO:0003677 | |
Chy05g00556 | 577 | SMART | hmgende2 | 349 | 418 | IPR009071 | - | |
Chy05g00556 | 577 | MobiDBLite | consensus disorder prediction | 444 | 458 | - | - | |
Chy05g00556 | 577 | SMART | bright_3 | 117 | 208 | IPR001606 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g01519 | Chy-Chr4:21777365 | Chy05g00556 | Chy-Chr5:6082640 | 6.07E-10 | dispersed | |
Chy05g00556 | Chy-Chr5:6082640 | Chy07g00366 | Chy-Chr7:2961623 | 7.38E-43 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17999 | PF01388 | ARID | 2.50E-17 | CL0123 | Chy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy05g00556 | - | - | csv:101205891 | 940.258 |